PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Bra000211.1-P Alkaloid T3O medium borderline
Bra000572.1-P Alkaloid T3O medium borderline
Bra000768.1-P Alkaloid T3O medium borderline
Bra000769.1-P Alkaloid T3O medium borderline
Bra001741.1-P Alkaloid T3O medium pass
Bra003019.1-P Alkaloid T3O medium borderline
Bra003129.1-P Alkaloid T3O medium borderline
Bra003247.1-P Alkaloid T3O low borderline
Bra004591.1-P Alkaloid T3O medium borderline
Bra004714.1-P Alkaloid T3O medium pass
Bra004921.1-P Alkaloid T3O medium borderline
Bra005596.1-P Alkaloid T3O medium pass
Bra005843.1-P Alkaloid T3O low borderline
Bra005863.1-P Alkaloid T3O medium pass
Bra006743.1-P Alkaloid T3O low borderline
Bra006829.1-P Alkaloid T3O medium borderline
Bra006987.1-P Alkaloid T3O medium borderline
Bra006988.1-P Alkaloid T3O medium borderline
Bra007259.1-P Alkaloid T3O medium pass
Bra007571.1-P Alkaloid T3O medium borderline
Bra008134.1-P Alkaloid T3O medium borderline
Bra008760.1-P Alkaloid T3O low borderline
Bra009070.1-P Alkaloid T3O medium borderline
Bra009126.1-P Alkaloid T3O medium pass
Bra009148.1-P Alkaloid T3O medium borderline
Bra009149.1-P Alkaloid T3O medium borderline
Bra009312.1-P Alkaloid T3O medium borderline
Bra009817.1-P Alkaloid T3O medium borderline
Bra009820.1-P Alkaloid T3O medium borderline
Bra010214.1-P Alkaloid T3O medium borderline
Bra010596.1-P Alkaloid T3O medium borderline
Bra010597.1-P Alkaloid T3O medium borderline
Bra011276.1-P Alkaloid T3O medium borderline
Bra011280.1-P Alkaloid T3O medium borderline
Bra011678.1-P Alkaloid T3O medium pass
Bra011755.1-P Alkaloid T3O medium borderline
Bra011756.1-P Alkaloid T3O medium borderline
Bra011758.1-P Alkaloid T3O medium borderline
Bra011761.1-P Alkaloid T3O medium borderline
Bra012006.1-P Alkaloid T3O low borderline
Bra012150.1-P Alkaloid T3O medium borderline
Bra012151.1-P Alkaloid T3O medium borderline
Bra012152.1-P Alkaloid T3O medium borderline
Bra012514.1-P Alkaloid T3O medium borderline
Bra012551.1-P Alkaloid T3O medium pass
Bra012792.1-P Alkaloid T3O medium pass
Bra012793.1-P Alkaloid T3O medium pass
Bra013024.1-P Alkaloid T3O medium pass
Bra013227.1-P Alkaloid T3O medium borderline
Bra013386.1-P Alkaloid T3O medium pass