Brassica rapa (brassica_rapa)
Imported from atlas release summary for Brassica rapa.
1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1938
Candidate Genes
BAHD
6.55%
C3'H/CYP98A
6.3%
C4H
6.18%
POD
4.1%
CYP76
3.93%
IFS
3.87%
4CL
3.52%
UGT
3.4%
Other Families
62.15%
More Families (97)
F3H
155
3.19%
T3O
154
3.17%
UFGT
152
3.13%
7DLGT
148
3.05%
DWF4/CYP90B1
138
2.84%
NMT
110
2.27%
BR6OX2/CYP85A2
108
2.22%
F3'H/CYP75B
104
2.14%
CODM/T6ODM
99
2.04%
STR
80
1.65%
SGD
79
1.63%
CYP71
75
1.54%
TRI/TRII
73
1.5%
SMT1/SMT2/SMT3
70
1.44%
H6H
68
1.4%
CSE
60
1.24%
SLS
53
1.09%
CAD
49
1.01%
PYKS
47
0.97%
T16H
44
0.91%
CAS
41
0.84%
TPS
40
0.82%
BBE
39
0.8%
COMT
39
0.8%
GES
38
0.78%
G8O/G8H
38
0.78%
IFR
38
0.78%
F5H/CYP84A
37
0.76%
LAC
36
0.74%
RAS
35
0.72%
TAT
34
0.7%
CYP90D1
34
0.7%
ANR
33
0.68%
IO
31
0.64%
FNS
31
0.64%
LAMT
30
0.62%
16OMT
28
0.58%
HCT
27
0.56%
CCR
26
0.54%
GS
24
0.49%
PAL
24
0.49%
F3'5'H/CYP75A
23
0.47%
ANS/LDOX
21
0.43%
CYP51G1
20
0.41%
8HGO
19
0.39%
CPD/CYP90A1
19
0.39%
GGPPS
18
0.37%
BR6OX1/CYP85A1
17
0.35%
CPR
16
0.33%
7DLH
15
0.31%
PMT
14
0.29%
NCS
14
0.29%
COR
13
0.27%
CHS
13
0.27%
SQE
13
0.27%
FPPS
13
0.27%
DFR
11
0.23%
CCoAOMT
11
0.23%
AACT
11
0.23%
MPO
9
0.19%
CNMT
9
0.19%
SQS/FDFT1
9
0.19%
CHI
8
0.16%
MVK
8
0.16%
HPPR
7
0.14%
ROT3/CYP90C1
7
0.14%
MVD
7
0.14%
CYP719
6
0.12%
CYP80F1
6
0.12%
TYDC_DDC
6
0.12%
DWF7
6
0.12%
SMO1/SMO2
6
0.12%
ISY
5
0.1%
CYP80B1
5
0.1%
ADC
5
0.1%
XMT_MXMT_DXMT
5
0.1%
TDC
4
0.08%
DET2
4
0.08%
IDI
4
0.08%
DXS
4
0.08%
HMGR
4
0.08%
MCT/IspD
4
0.08%
DXR
4
0.08%
DWF5
3
0.06%
DWF1
3
0.06%
PMK
3
0.06%
FLS
2
0.04%
CPI1
2
0.04%
HYD1
2
0.04%
HDR/IspH
2
0.04%
HMGS
2
0.04%
MDS/IspF
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
FK
1
0.02%
HDS/IspG
1
0.02%
GPPS
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 598 | 20 | BAHD (263) | View species results |
| Alkaloid pathway | 432 | 17 | 7DLGT (75) | View species results |
| Phenylpropanoid pathway | 407 | 11 | POD (183) | View species results |
| Flavonoid pathway | 231 | 11 | UFGT (148) | View species results |
| Rosmarinic acid pathway | 154 | 7 | C4H (63) | View species results |
| Steroid pathway | 116 | 13 | SMT1/SMT2/SMT3 (42) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1919 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 380 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Bra005390.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra005392.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra006964.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra013472.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra013473.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra013475.1-P | Alkaloid | BBE | medium | borderline | BBE__00006__sp_Q9FI21_BBE28_ARATH |
| Bra013476.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra013478.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra013501.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra014885.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra014886.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra014890.1-P | Alkaloid | BBE | medium | borderline | BBE__00005__sp_Q93ZA3_BBE13_ARATH |
| Bra016272.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra019831.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra020915.1-P | Alkaloid | BBE | medium | borderline | BBE__00005__sp_Q93ZA3_BBE13_ARATH |
| Bra021930.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra022992.1-P | Alkaloid | BBE | medium | borderline | BBE__00005__sp_Q93ZA3_BBE13_ARATH |
| Bra023122.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra023123.1-P | Alkaloid | BBE | medium | borderline | BBE__00005__sp_Q93ZA3_BBE13_ARATH |
| Bra023124.1-P | Alkaloid | BBE | medium | borderline | BBE__00006__sp_Q9FI21_BBE28_ARATH |
| Bra023126.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra023127.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra023131.1-P | Alkaloid | BBE | medium | borderline | BBE__00005__sp_Q93ZA3_BBE13_ARATH |
| Bra024717.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra024719.1-P | Alkaloid | BBE | medium | borderline | BBE__00007__sp_Q9FZC4_FOX1_ARATH |
| Bra027547.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra027549.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra027550.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra027552.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra027553.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra027554.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra027555.1-P | Alkaloid | BBE | medium | borderline | BBE__00006__sp_Q9FI21_BBE28_ARATH |
| Bra028530.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra031780.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra033739.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra033740.1-P | Alkaloid | BBE | medium | borderline | BBE__00005__sp_Q93ZA3_BBE13_ARATH |
| Bra033743.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra038798.1-P | Alkaloid | BBE | medium | borderline | BBE__00004__sp_O64743_BBE15_ARATH |
| Bra038799.1-P | Alkaloid | BBE | medium | borderline | BBE__00005__sp_Q93ZA3_BBE13_ARATH |