PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status Best Target
Bra004000.1-P Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
Bra004115.1-P Terpenoid BAHD medium pass BAHD__00030__sp_O80816_GLC_ARATH
Bra004380.1-P Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
Bra004595.1-P Terpenoid BAHD medium pass BAHD__00029__sp_O80685_ZDHC4_ARATH
Bra004906.1-P Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Bra004977.1-P Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Bra004996.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra005065.1-P Terpenoid BAHD medium pass BAHD__00064__sp_Q93ZR6_WSD1_ARATH
Bra005137.1-P Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
Bra005488.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra005835.1-P Terpenoid BAHD low borderline BAHD__00049__sp_Q5PNZ1_ZDH21_ARATH
Bra005979.1-P Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra006142.1-P Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Bra006160.1-P Terpenoid BAHD medium pass BAHD__00066__sp_Q94CK0_WSD7_ARATH
Bra006161.1-P Terpenoid BAHD medium pass BAHD__00066__sp_Q94CK0_WSD7_ARATH
Bra006162.1-P Terpenoid BAHD medium pass BAHD__00066__sp_Q94CK0_WSD7_ARATH
Bra006362.1-P Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Bra006412.1-P Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Bra006555.1-P Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
Bra006646.1-P Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Bra006796.1-P Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Bra006797.1-P Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Bra006887.1-P Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
Bra006888.1-P Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
Bra007283.1-P Terpenoid BAHD medium pass BAHD__00013__sp_B3DN87_ZDH12_ARATH
Bra007284.1-P Terpenoid BAHD medium pass BAHD__00085__sp_Q9M1K5_ZDH13_ARATH
Bra007344.1-P Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Bra007563.1-P Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Bra007744.1-P Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
Bra007918.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra008008.1-P Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
Bra008010.1-P Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
Bra008174.1-P Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Bra008377.1-P Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
Bra008555.1-P Terpenoid BAHD medium pass BAHD__00084__sp_Q9M115_ZDH16_ARATH
Bra008812.1-P Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
Bra008910.1-P Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Bra009084.1-P Terpenoid BAHD medium pass BAHD__00049__sp_Q5PNZ1_ZDH21_ARATH
Bra009162.1-P Terpenoid BAHD medium pass BAHD__00078__sp_Q9LHS7_GPAT7_ARATH
Bra009292.1-P Terpenoid BAHD medium pass BAHD__00054__sp_Q8GYW8_SCT_ARATH
Bra009333.1-P Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra009394.1-P Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Bra009395.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra009471.1-P Terpenoid BAHD medium pass BAHD__00042__sp_Q500Z2_ZDH20_ARATH
Bra009632.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra009716.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra010272.1-P Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Bra010319.1-P Terpenoid BAHD medium pass BAHD__00054__sp_Q8GYW8_SCT_ARATH
Bra010323.1-P Terpenoid BAHD medium pass BAHD__00092__sp_Q9SU91_LPXA_ARATH
Bra010486.1-P Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH