PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

1938
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status Best Target
Bra010711.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra010903.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra010928.1-P Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Bra011121.1-P Terpenoid BAHD medium pass BAHD__00092__sp_Q9SU91_LPXA_ARATH
Bra011223.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra011224.1-P Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Bra011353.1-P Terpenoid BAHD low borderline BAHD__00012__sp_A1XWY7_CFAT_PETHY
Bra011598.1-P Terpenoid BAHD medium pass BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
Bra011689.1-P Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
Bra012137.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra012138.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra012153.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra012531.1-P Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
Bra012794.1-P Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
Bra012851.1-P Terpenoid BAHD medium pass BAHD__00067__sp_Q9ASU1_DGAT2_ARATH
Bra013070.1-P Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Bra013152.1-P Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Bra013430.1-P Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
Bra013641.1-P Terpenoid BAHD medium pass BAHD__00065__sp_Q94C49_ZDH18_ARATH
Bra013642.1-P Terpenoid BAHD medium pass BAHD__00065__sp_Q94C49_ZDH18_ARATH
Bra013719.1-P Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Bra013770.1-P Terpenoid BAHD medium pass BAHD__00023__sp_O22975_LPAAT_ARATH
Bra013809.1-P Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Bra013820.1-P Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH
Bra014125.1-P Terpenoid BAHD medium pass BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
Bra014142.1-P Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
Bra014469.1-P Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Bra014614.1-P Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Bra014887.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra014888.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra014988.1-P Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Bra015058.1-P Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra015124.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra015285.1-P Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
Bra015507.1-P Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
Bra016000.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra016001.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra016209.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra016211.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra016212.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra016958.1-P Terpenoid BAHD medium pass BAHD__00029__sp_O80685_ZDHC4_ARATH
Bra017023.1-P Terpenoid BAHD medium pass BAHD__00031__sp_P0DO25_AT9_ACTDE
Bra017041.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra017137.1-P Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
Bra017293.1-P Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Bra017294.1-P Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Bra017337.1-P Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
Bra018001.1-P Terpenoid BAHD medium pass BAHD__00087__sp_Q9M3B1_WSD6_ARATH
Bra018035.1-P Terpenoid BAHD medium pass BAHD__00086__sp_Q9M306_ZDH10_ARATH
Bra018040.1-P Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH