PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra004175.1-P Alkaloid LAMT medium borderline
Bra004183.1-P Alkaloid LAMT medium borderline
Bra004184.1-P Alkaloid LAMT medium borderline
Bra004277.1-P Alkaloid LAMT medium borderline
Bra005802.1-P Alkaloid LAMT medium borderline
Bra009459.1-P Alkaloid LAMT medium borderline
Bra009460.1-P Alkaloid LAMT medium borderline
Bra010356.1-P Alkaloid LAMT medium borderline
Bra010433.1-P Alkaloid LAMT low borderline
Bra010556.1-P Alkaloid LAMT medium borderline
Bra011685.1-P Alkaloid LAMT medium borderline
Bra012184.1-P Alkaloid LAMT medium borderline
Bra017763.1-P Alkaloid LAMT medium borderline
Bra019711.1-P Alkaloid LAMT medium borderline
Bra026163.1-P Alkaloid LAMT medium borderline
Bra026440.1-P Alkaloid LAMT medium borderline
Bra028399.1-P Alkaloid LAMT medium borderline
Bra028937.1-P Alkaloid LAMT medium borderline
Bra030012.1-P Alkaloid LAMT medium borderline
Bra032304.1-P Alkaloid LAMT medium borderline
Bra033964.1-P Alkaloid LAMT medium borderline
Bra034836.1-P Alkaloid LAMT medium borderline
Bra034838.1-P Alkaloid LAMT medium borderline
Bra036601.1-P Alkaloid LAMT medium borderline
Bra036847.1-P Alkaloid LAMT medium borderline
Bra038514.1-P Alkaloid LAMT medium borderline
Bra040633.1-P Alkaloid LAMT medium borderline
Bra000260.1-P Alkaloid MPO high pass
Bra004705.1-P Alkaloid MPO low borderline
Bra014911.1-P Alkaloid MPO low borderline
Bra016871.1-P Alkaloid MPO high pass
Bra018469.1-P Alkaloid MPO medium pass
Bra034523.1-P Alkaloid MPO medium pass
Bra036916.1-P Alkaloid MPO medium pass
Bra038431.1-P Alkaloid MPO low borderline
Bra038432.1-P Alkaloid MPO medium pass
Bra010405.1-P Alkaloid NCS medium borderline
Bra014274.1-P Alkaloid NCS medium borderline
Bra014312.1-P Alkaloid NCS medium borderline
Bra019485.1-P Alkaloid NCS medium borderline
Bra020362.1-P Alkaloid NCS medium borderline
Bra020890.1-P Alkaloid NCS medium borderline
Bra030500.1-P Alkaloid NCS medium borderline
Bra031090.1-P Alkaloid NCS medium borderline
Bra033324.1-P Alkaloid NCS medium borderline
Bra033822.1-P Alkaloid NCS medium borderline
Bra034181.1-P Alkaloid NCS medium borderline
Bra034425.1-P Alkaloid NCS medium borderline
Bra038780.1-P Alkaloid NCS medium borderline
Bra039219.1-P Alkaloid NCS medium borderline