PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra032179.1-P Alkaloid 7DLGT medium pass
Bra033266.1-P Alkaloid 7DLGT medium pass
Bra033494.1-P Alkaloid 7DLGT medium pass
Bra033807.1-P Alkaloid 7DLGT high pass
Bra033808.1-P Alkaloid 7DLGT medium pass
Bra033891.1-P Alkaloid 7DLGT medium pass
Bra034386.1-P Alkaloid 7DLGT medium pass
Bra034608.1-P Alkaloid 7DLGT low borderline
Bra034609.1-P Alkaloid 7DLGT low borderline
Bra034610.1-P Alkaloid 7DLGT low borderline
Bra034848.1-P Alkaloid 7DLGT medium pass
Bra035271.1-P Alkaloid 7DLGT low borderline
Bra037155.1-P Alkaloid 7DLGT low borderline
Bra037386.1-P Alkaloid 7DLGT medium pass
Bra037821.1-P Alkaloid 7DLGT low borderline
Bra038079.1-P Alkaloid 7DLGT medium pass
Bra038080.1-P Alkaloid 7DLGT low borderline
Bra038445.1-P Alkaloid 7DLGT low borderline
Bra038862.1-P Alkaloid 7DLGT medium pass
Bra039152.1-P Alkaloid 7DLGT medium pass
Bra039191.1-P Alkaloid 7DLGT low borderline
Bra039192.1-P Alkaloid 7DLGT high pass
Bra039544.1-P Alkaloid 7DLGT medium pass
Bra039545.1-P Alkaloid 7DLGT low borderline
Bra039547.1-P Alkaloid 7DLGT low borderline
Bra039557.1-P Alkaloid 7DLGT low borderline
Bra040690.1-P Alkaloid 7DLGT low borderline
Bra004951.1-P Alkaloid 7DLH medium borderline
Bra009803.1-P Alkaloid 7DLH medium borderline
Bra015865.1-P Alkaloid 7DLH medium borderline
Bra018803.1-P Alkaloid 7DLH medium pass
Bra018806.1-P Alkaloid 7DLH medium borderline
Bra020345.1-P Alkaloid 7DLH medium pass
Bra026692.1-P Alkaloid 7DLH medium borderline
Bra027319.1-P Alkaloid 7DLH medium borderline
Bra027320.1-P Alkaloid 7DLH medium borderline
Bra027321.1-P Alkaloid 7DLH medium borderline
Bra028182.1-P Alkaloid 7DLH medium borderline
Bra029117.1-P Alkaloid 7DLH medium borderline
Bra034021.1-P Alkaloid 7DLH low borderline
Bra034022.1-P Alkaloid 7DLH medium borderline
Bra035844.1-P Alkaloid 7DLH low borderline
Bra003690.1-P Alkaloid 8HGO medium borderline
Bra005003.1-P Alkaloid 8HGO low borderline
Bra007189.1-P Alkaloid 8HGO low borderline
Bra010185.1-P Alkaloid 8HGO medium borderline
Bra012327.1-P Alkaloid 8HGO medium borderline
Bra013586.1-P Alkaloid 8HGO medium borderline
Bra014721.1-P Alkaloid 8HGO low borderline
Bra015693.1-P Alkaloid 8HGO medium borderline