PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra039328.1-P Flavonoid IFS medium borderline
Bra039329.1-P Flavonoid IFS medium borderline
Bra039330.1-P Flavonoid IFS medium borderline
Bra039495.1-P Flavonoid IFS medium borderline
Bra039930.1-P Flavonoid IFS medium borderline
Bra039931.1-P Flavonoid IFS low borderline
Bra040552.1-P Flavonoid IFS low borderline
Bra040762.1-P Flavonoid IFS low borderline
Bra040819.1-P Flavonoid IFS medium borderline
Bra040821.1-P Flavonoid IFS medium borderline
Bra040985.1-P Flavonoid IFS low borderline
Bra003126.1-P Flavonoid PAL high pass
Bra005221.1-P Flavonoid PAL medium pass
Bra006985.1-P Flavonoid PAL high pass
Bra017210.1-P Flavonoid PAL high pass
Bra028793.1-P Flavonoid PAL medium pass
Bra029831.1-P Flavonoid PAL high pass
Bra030322.1-P Flavonoid PAL high pass
Bra039777.1-P Flavonoid PAL high pass
Bra000329.1-P Flavonoid UFGT medium pass
Bra000330.1-P Flavonoid UFGT medium pass
Bra000471.1-P Flavonoid UFGT high pass
Bra000542.1-P Flavonoid UFGT high pass
Bra000942.1-P Flavonoid UFGT high pass
Bra001845.1-P Flavonoid UFGT medium pass
Bra001846.1-P Flavonoid UFGT medium pass
Bra001847.1-P Flavonoid UFGT high pass
Bra002556.1-P Flavonoid UFGT high pass
Bra003021.1-P Flavonoid UFGT medium pass
Bra003220.1-P Flavonoid UFGT high pass
Bra003824.1-P Flavonoid UFGT high pass
Bra004787.1-P Flavonoid UFGT medium pass
Bra004788.1-P Flavonoid UFGT medium pass
Bra005227.1-P Flavonoid UFGT medium pass
Bra005229.1-P Flavonoid UFGT medium pass
Bra005241.1-P Flavonoid UFGT medium pass
Bra005242.1-P Flavonoid UFGT medium pass
Bra005243.1-P Flavonoid UFGT medium pass
Bra005245.1-P Flavonoid UFGT medium pass
Bra005246.1-P Flavonoid UFGT medium pass
Bra005641.1-P Flavonoid UFGT high pass
Bra005869.1-P Flavonoid UFGT medium pass
Bra006271.1-P Flavonoid UFGT high pass
Bra006707.1-P Flavonoid UFGT high pass
Bra006971.1-P Flavonoid UFGT medium pass
Bra006972.1-P Flavonoid UFGT medium pass
Bra006973.1-P Flavonoid UFGT medium pass
Bra007184.1-P Flavonoid UFGT high pass
Bra007812.1-P Flavonoid UFGT high pass
Bra008354.1-P Flavonoid UFGT medium pass