PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra037219.1-P Steroid DWF4/CYP90B1 low borderline
Bra038437.1-P Steroid DWF4/CYP90B1 low borderline
Bra039047.1-P Steroid DWF4/CYP90B1 low borderline
Bra039189.1-P Steroid DWF4/CYP90B1 low borderline
Bra039236.1-P Steroid DWF4/CYP90B1 low borderline
Bra039327.1-P Steroid DWF4/CYP90B1 medium borderline
Bra039329.1-P Steroid DWF4/CYP90B1 low borderline
Bra039930.1-P Steroid DWF4/CYP90B1 low borderline
Bra039931.1-P Steroid DWF4/CYP90B1 medium borderline
Bra040819.1-P Steroid DWF4/CYP90B1 low borderline
Bra040821.1-P Steroid DWF4/CYP90B1 low borderline
Bra014252.1-P Steroid DWF5 medium borderline
Bra030492.1-P Steroid DWF5 medium pass
Bra041028.1-P Steroid DWF5 medium pass
Bra001053.1-P Steroid DWF7 medium pass
Bra001054.1-P Steroid DWF7 medium pass
Bra001055.1-P Steroid DWF7 medium pass
Bra021428.1-P Steroid DWF7 medium pass
Bra021429.1-P Steroid DWF7 medium pass
Bra039180.1-P Steroid DWF7 medium pass
Bra019638.1-P Steroid FK high pass
Bra012204.1-P Steroid HYD1 high pass
Bra025788.1-P Steroid HYD1 high pass
Bra005596.1-P Steroid ROT3/CYP90C1 medium borderline
Bra011678.1-P Steroid ROT3/CYP90C1 medium borderline
Bra015394.1-P Steroid ROT3/CYP90C1 medium borderline
Bra015998.1-P Steroid ROT3/CYP90C1 medium borderline
Bra017757.1-P Steroid ROT3/CYP90C1 medium borderline
Bra030023.1-P Steroid ROT3/CYP90C1 medium borderline
Bra039330.1-P Steroid ROT3/CYP90C1 medium borderline
Bra013643.1-P Steroid SMO1/SMO2 medium pass
Bra019269.1-P Steroid SMO1/SMO2 medium pass
Bra030681.1-P Steroid SMO1/SMO2 medium pass
Bra031573.1-P Steroid SMO1/SMO2 low borderline
Bra033117.1-P Steroid SMO1/SMO2 medium pass
Bra039978.1-P Steroid SMO1/SMO2 medium pass
Bra000576.1-P Steroid SMT1/SMT2/SMT3 medium pass
Bra001359.1-P Steroid SMT1/SMT2/SMT3 low borderline
Bra001440.1-P Steroid SMT1/SMT2/SMT3 medium pass
Bra001441.1-P Steroid SMT1/SMT2/SMT3 medium pass
Bra002444.1-P Steroid SMT1/SMT2/SMT3 low borderline
Bra003840.1-P Steroid SMT1/SMT2/SMT3 low borderline
Bra003849.1-P Steroid SMT1/SMT2/SMT3 medium pass
Bra005488.1-P Steroid SMT1/SMT2/SMT3 medium pass
Bra005979.1-P Steroid SMT1/SMT2/SMT3 low borderline
Bra006211.1-P Steroid SMT1/SMT2/SMT3 medium pass
Bra006362.1-P Steroid SMT1/SMT2/SMT3 medium pass
Bra006646.1-P Steroid SMT1/SMT2/SMT3 low borderline
Bra009333.1-P Steroid SMT1/SMT2/SMT3 low borderline
Bra009394.1-P Steroid SMT1/SMT2/SMT3 medium pass