PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
Bra028985.1-P Terpenoid BAHD medium pass BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Bra029052.1-P Terpenoid BAHD low borderline BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Bra029072.1-P Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
Bra029363.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra029388.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra029691.1-P Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Bra029760.1-P Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
Bra029836.1-P Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra029842.1-P Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Bra029938.1-P Terpenoid BAHD medium pass BAHD__00087__sp_Q9M3B1_WSD6_ARATH
Bra029939.1-P Terpenoid BAHD medium pass BAHD__00087__sp_Q9M3B1_WSD6_ARATH
Bra029991.1-P Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra029999.1-P Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Bra030052.1-P Terpenoid BAHD low borderline BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
Bra030190.1-P Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
Bra030195.1-P Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
Bra030279.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra030347.1-P Terpenoid BAHD medium pass BAHD__00066__sp_Q94CK0_WSD7_ARATH
Bra030351.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra030359.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra030360.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra030448.1-P Terpenoid BAHD medium pass BAHD__00094__sp_Q9SYC8_LPAT3_ARATH
Bra031453.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra031989.1-P Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Bra031990.1-P Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Bra031998.1-P Terpenoid BAHD low borderline BAHD__00062__sp_Q93V61_LCAT3_ARATH
Bra032189.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra032533.1-P Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
Bra032643.1-P Terpenoid BAHD medium pass BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
Bra032681.1-P Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra032743.1-P Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Bra032805.1-P Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
Bra032837.1-P Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Bra032875.1-P Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Bra032918.1-P Terpenoid BAHD medium pass BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
Bra032963.1-P Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
Bra033106.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra033107.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra033249.1-P Terpenoid BAHD medium pass BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
Bra033323.1-P Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
Bra033395.1-P Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Bra033446.1-P Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Bra033526.1-P Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Bra033846.1-P Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
Bra034110.1-P Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Bra034255.1-P Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Bra034377.1-P Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Bra034796.1-P Terpenoid BAHD medium pass BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
Bra034797.1-P Terpenoid BAHD low borderline BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
Bra034843.1-P Terpenoid BAHD medium pass BAHD__00071__sp_Q9CAY3_GPAT5_ARATH