PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Bra015934.1-P Terpenoid CYP76 medium borderline
Bra016499.1-P Terpenoid CYP76 low borderline
Bra016739.1-P Terpenoid CYP76 low borderline
Bra016820.1-P Terpenoid CYP76 medium pass
Bra016828.1-P Terpenoid CYP76 low borderline
Bra016888.1-P Terpenoid CYP76 medium pass
Bra016907.1-P Terpenoid CYP76 low borderline
Bra016908.1-P Terpenoid CYP76 medium borderline
Bra016964.1-P Terpenoid CYP76 medium borderline
Bra017333.1-P Terpenoid CYP76 low borderline
Bra017752.1-P Terpenoid CYP76 medium borderline
Bra017817.1-P Terpenoid CYP76 medium pass
Bra017818.1-P Terpenoid CYP76 medium borderline
Bra017819.1-P Terpenoid CYP76 medium pass
Bra017871.1-P Terpenoid CYP76 low borderline
Bra018069.1-P Terpenoid CYP76 medium borderline
Bra018311.1-P Terpenoid CYP76 medium pass
Bra018471.1-P Terpenoid CYP76 medium borderline
Bra018856.1-P Terpenoid CYP76 medium borderline
Bra019366.1-P Terpenoid CYP76 medium pass
Bra019538.1-P Terpenoid CYP76 medium borderline
Bra019636.1-P Terpenoid CYP76 medium borderline
Bra019782.1-P Terpenoid CYP76 low borderline
Bra019812.1-P Terpenoid CYP76 low borderline
Bra019839.1-P Terpenoid CYP76 low borderline
Bra020459.1-P Terpenoid CYP76 medium borderline
Bra020467.1-P Terpenoid CYP76 medium borderline
Bra020678.1-P Terpenoid CYP76 medium pass
Bra020679.1-P Terpenoid CYP76 medium borderline
Bra020747.1-P Terpenoid CYP76 low borderline
Bra020836.1-P Terpenoid CYP76 medium pass
Bra021482.1-P Terpenoid CYP76 low borderline
Bra021490.1-P Terpenoid CYP76 low borderline
Bra021636.1-P Terpenoid CYP76 medium pass
Bra021637.1-P Terpenoid CYP76 medium pass
Bra022588.1-P Terpenoid CYP76 low borderline
Bra022591.1-P Terpenoid CYP76 medium pass
Bra022802.1-P Terpenoid CYP76 medium pass
Bra022803.1-P Terpenoid CYP76 medium pass
Bra022813.1-P Terpenoid CYP76 medium borderline
Bra023464.1-P Terpenoid CYP76 medium pass
Bra023630.1-P Terpenoid CYP76 low borderline
Bra023730.1-P Terpenoid CYP76 medium pass
Bra023731.1-P Terpenoid CYP76 medium pass
Bra024002.1-P Terpenoid CYP76 low borderline
Bra024133.1-P Terpenoid CYP76 low borderline
Bra024479.1-P Terpenoid CYP76 medium borderline
Bra025188.1-P Terpenoid CYP76 medium borderline
Bra025189.1-P Terpenoid CYP76 medium borderline
Bra025190.1-P Terpenoid CYP76 medium borderline