PlantSME Plant secondary metabolism enzyme database

Brassica rapa (brassica_rapa)

Imported from atlas release summary for Brassica rapa.

2396
Candidate Protein Records
1938
Pathway-Level Records
4856
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 30.86% Alkaloid pathway 22.29% Phenylpropanoid pathway 21.0% Flavonoid pathway 11.92% Rosmarinic acid pathway 7.95% Steroid pathway 5.99%
Family Distribution
BAHD 6.55% C3'H/CYP98A 6.3% C4H 6.18% POD 4.1% CYP76 3.93% IFS 3.87% 4CL 3.52% UGT 3.4%
Other Families 62.15%
More Families (97)
F3H 155 3.19% T3O 154 3.17% UFGT 152 3.13% 7DLGT 148 3.05% DWF4/CYP90B1 138 2.84% NMT 110 2.27% BR6OX2/CYP85A2 108 2.22% F3'H/CYP75B 104 2.14% CODM/T6ODM 99 2.04% STR 80 1.65% SGD 79 1.63% CYP71 75 1.54% TRI/TRII 73 1.5% SMT1/SMT2/SMT3 70 1.44% H6H 68 1.4% CSE 60 1.24% SLS 53 1.09% CAD 49 1.01% PYKS 47 0.97% T16H 44 0.91% CAS 41 0.84% TPS 40 0.82% BBE 39 0.8% COMT 39 0.8% GES 38 0.78% G8O/G8H 38 0.78% IFR 38 0.78% F5H/CYP84A 37 0.76% LAC 36 0.74% RAS 35 0.72% TAT 34 0.7% CYP90D1 34 0.7% ANR 33 0.68% IO 31 0.64% FNS 31 0.64% LAMT 30 0.62% 16OMT 28 0.58% HCT 27 0.56% CCR 26 0.54% GS 24 0.49% PAL 24 0.49% F3'5'H/CYP75A 23 0.47% ANS/LDOX 21 0.43% CYP51G1 20 0.41% 8HGO 19 0.39% CPD/CYP90A1 19 0.39% GGPPS 18 0.37% BR6OX1/CYP85A1 17 0.35% CPR 16 0.33% 7DLH 15 0.31% PMT 14 0.29% NCS 14 0.29% COR 13 0.27% CHS 13 0.27% SQE 13 0.27% FPPS 13 0.27% DFR 11 0.23% CCoAOMT 11 0.23% AACT 11 0.23% MPO 9 0.19% CNMT 9 0.19% SQS/FDFT1 9 0.19% CHI 8 0.16% MVK 8 0.16% HPPR 7 0.14% ROT3/CYP90C1 7 0.14% MVD 7 0.14% CYP719 6 0.12% CYP80F1 6 0.12% TYDC_DDC 6 0.12% DWF7 6 0.12% SMO1/SMO2 6 0.12% ISY 5 0.1% CYP80B1 5 0.1% ADC 5 0.1% XMT_MXMT_DXMT 5 0.1% TDC 4 0.08% DET2 4 0.08% IDI 4 0.08% DXS 4 0.08% HMGR 4 0.08% MCT/IspD 4 0.08% DXR 4 0.08% DWF5 3 0.06% DWF1 3 0.06% PMK 3 0.06% FLS 2 0.04% CPI1 2 0.04% HYD1 2 0.04% HDR/IspH 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% 6OMT_4OMT_SOMT 1 0.02% FK 1 0.02% HDS/IspG 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 598 20 BAHD (263) View species results
Alkaloid pathway 432 17 7DLGT (75) View species results
Phenylpropanoid pathway 407 11 POD (183) View species results
Flavonoid pathway 231 11 UFGT (148) View species results
Rosmarinic acid pathway 154 7 C4H (63) View species results
Steroid pathway 116 13 SMT1/SMT2/SMT3 (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1919 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 380 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status Best Target
Bra026039.1-P Terpenoid UGT medium pass UGT__00076__sp_Q8L7M0_TUN_ARATH
Bra026546.1-P Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Bra026714.1-P Terpenoid UGT medium pass UGT__00076__sp_Q8L7M0_TUN_ARATH
Bra028098.1-P Terpenoid UGT medium pass UGT__00079__sp_Q94A84_U72E1_ARATH
Bra029045.1-P Terpenoid UGT medium pass UGT__00035__sp_I1KEV6_FG3H_SOYBN
Bra029046.1-P Terpenoid UGT medium pass UGT__00035__sp_I1KEV6_FG3H_SOYBN
Bra029047.1-P Terpenoid UGT medium pass UGT__00035__sp_I1KEV6_FG3H_SOYBN
Bra029049.1-P Terpenoid UGT medium pass UGT__00035__sp_I1KEV6_FG3H_SOYBN
Bra030620.1-P Terpenoid UGT medium pass UGT__00108__sp_Q9SYK9_U74E2_ARATH
Bra031102.1-P Terpenoid UGT medium pass UGT__00099__sp_Q9LTH3_U76E1_ARATH
Bra031290.1-P Terpenoid UGT medium pass UGT__00100__sp_Q9LVF0_U84A2_ARATH
Bra031303.1-P Terpenoid UGT medium pass UGT__00097__sp_Q9LSY9_U71B1_ARATH
Bra031304.1-P Terpenoid UGT medium pass UGT__00097__sp_Q9LSY9_U71B1_ARATH
Bra031306.1-P Terpenoid UGT medium pass UGT__00097__sp_Q9LSY9_U71B1_ARATH
Bra031307.1-P Terpenoid UGT medium pass UGT__00096__sp_Q9LSY8_U71B2_ARATH
Bra031310.1-P Terpenoid UGT medium pass UGT__00095__sp_Q9LSY6_U71B6_ARATH
Bra031311.1-P Terpenoid UGT medium pass UGT__00095__sp_Q9LSY6_U71B6_ARATH
Bra031340.1-P Terpenoid UGT low borderline UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra031343.1-P Terpenoid UGT medium pass UGT__00081__sp_Q9C768_U76B1_ARATH
Bra031386.1-P Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra031387.1-P Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra031388.1-P Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra031483.1-P Terpenoid UGT medium pass UGT__00113__sp_Q9ZVY5_U75B2_ARATH
Bra031559.1-P Terpenoid UGT medium pass UGT__00089__sp_Q9LML6_U71C4_ARATH
Bra031561.1-P Terpenoid UGT low borderline UGT__00089__sp_Q9LML6_U71C4_ARATH
Bra032179.1-P Terpenoid UGT medium pass UGT__00048__sp_O22182_U84B1_ARATH
Bra033266.1-P Terpenoid UGT medium pass UGT__00092__sp_Q9LNI1_U72B3_ARATH
Bra033417.1-P Terpenoid UGT medium pass UGT__00082__sp_Q9C9B0_U89B1_ARATH
Bra033494.1-P Terpenoid UGT medium pass UGT__00054__sp_O23406_U75D1_ARATH
Bra033807.1-P Terpenoid UGT medium pass UGT__00098__sp_Q9LTH2_U76E2_ARATH
Bra033808.1-P Terpenoid UGT medium pass UGT__00107__sp_Q9SNB1_U7E11_ARATH
Bra033891.1-P Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra034386.1-P Terpenoid UGT medium pass UGT__00105__sp_Q9SK82_U85A1_ARATH
Bra034608.1-P Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Bra034609.1-P Terpenoid UGT medium pass UGT__00078__sp_Q8W491_U73B3_ARATH
Bra034610.1-P Terpenoid UGT medium pass UGT__00077__sp_Q8VZE9_U73B1_ARATH
Bra034848.1-P Terpenoid UGT low borderline UGT__00081__sp_Q9C768_U76B1_ARATH
Bra035004.1-P Terpenoid UGT medium pass UGT__00035__sp_I1KEV6_FG3H_SOYBN
Bra035271.1-P Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
Bra037155.1-P Terpenoid UGT medium pass UGT__00101__sp_Q9LVR1_U72E2_ARATH
Bra037386.1-P Terpenoid UGT medium pass UGT__00103__sp_Q9M156_U72B1_ARATH
Bra037821.1-P Terpenoid UGT medium pass UGT__00024__sp_B3VI56_U91D2_STERE
Bra038079.1-P Terpenoid UGT medium pass UGT__00054__sp_O23406_U75D1_ARATH
Bra038080.1-P Terpenoid UGT medium pass UGT__00054__sp_O23406_U75D1_ARATH
Bra038445.1-P Terpenoid UGT medium pass UGT__00069__sp_Q0WW21_U75C1_ARATH
Bra038859.1-P Terpenoid UGT medium pass UGT__00079__sp_Q94A84_U72E1_ARATH
Bra038862.1-P Terpenoid UGT medium pass UGT__00079__sp_Q94A84_U72E1_ARATH
Bra039152.1-P Terpenoid UGT low borderline UGT__00034__sp_F8WLS6_UGT6_CATRO
Bra039154.1-P Terpenoid UGT medium pass UGT__00022__sp_B2XBQ5_85A19_PRUDU
Bra039191.1-P Terpenoid UGT medium pass UGT__00048__sp_O22182_U84B1_ARATH