PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
Reset
Gene Pathway Family Confidence Status
Cmedscaffold_1100015480.1 Alkaloid BBE low borderline
Cmedscaffold_1100015480.2 Alkaloid BBE low borderline
Cmedscaffold_1130018160.1 Alkaloid BBE medium borderline
Cmedscaffold_1130018170.1 Alkaloid BBE medium borderline
Cmedscaffold_1130018190.1 Alkaloid BBE medium borderline
Cmedscaffold_14300047900.1 Alkaloid BBE medium borderline
Cmedscaffold_1430047830.1 Alkaloid BBE medium borderline
Cmedscaffold_1680070270.1 Alkaloid BBE medium borderline
Cmedscaffold_1680070270.2 Alkaloid BBE medium borderline
Cmedscaffold_18320083110.1 Alkaloid BBE medium borderline
Cmedscaffold_19970091240.1 Alkaloid BBE medium borderline
Cmedscaffold_2090098650.1 Alkaloid BBE medium borderline
Cmedscaffold_2090098760.1 Alkaloid BBE medium borderline
Cmedscaffold_2090098770.1 Alkaloid BBE medium borderline
Cmedscaffold_210099420.1 Alkaloid BBE medium borderline
Cmedscaffold_2460119070.1 Alkaloid BBE medium borderline
Cmedscaffold_2940144820.1 Alkaloid BBE medium borderline
Cmedscaffold_2940144830.1 Alkaloid BBE medium borderline
Cmedscaffold_3350165510.1 Alkaloid BBE medium borderline
Cmedscaffold_3350165520.1 Alkaloid BBE medium borderline
Cmedscaffold_33570165610.1 Alkaloid BBE medium borderline
Cmedscaffold_3710182120.1 Alkaloid BBE medium borderline
Cmedscaffold_3710182130.1 Alkaloid BBE medium borderline
Cmedscaffold_3710182140.1 Alkaloid BBE medium borderline
Cmedscaffold_3710182150.1 Alkaloid BBE medium borderline
Cmedscaffold_3710182170.1 Alkaloid BBE medium borderline
Cmedscaffold_3710182180.1 Alkaloid BBE medium borderline
Cmedscaffold_41470202320.1 Alkaloid BBE medium borderline
Cmedscaffold_4290206560.1 Alkaloid BBE low borderline
Cmedscaffold_44210212230.1 Alkaloid BBE medium borderline
Cmedscaffold_46360218890.1 Alkaloid BBE medium borderline
Cmedscaffold_5360239800.1 Alkaloid BBE medium borderline
Cmedscaffold_5360239810.1 Alkaloid BBE medium borderline
Cmedscaffold_64850265540.1 Alkaloid BBE medium borderline
Cmedscaffold_6790271600.1 Alkaloid BBE medium borderline
Cmedscaffold_6790271620.1 Alkaloid BBE medium borderline
Cmedscaffold_7280283870.1 Alkaloid BBE medium borderline
Cmedscaffold_7280283880.1 Alkaloid BBE medium borderline
Cmedscaffold_7280283890.1 Alkaloid BBE medium borderline
Cmedscaffold_7280283900.1 Alkaloid BBE medium borderline
Cmedscaffold_7280283910.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291420.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291430.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291440.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291450.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291460.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291470.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291480.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291500.1 Alkaloid BBE medium borderline
Cmedscaffold_7620291510.1 Alkaloid BBE medium borderline