PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
Cmedscaffold_10350005370.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1050007800.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1210027480.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1210027660.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1210027840.1 Phenylpropanoid CSE medium pass
Cmedscaffold_12940035170.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1400045630.1 Phenylpropanoid CSE medium pass
Cmedscaffold_15_20061630.1 Phenylpropanoid CSE medium pass
Cmedscaffold_18160081700.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1840083400.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1840083400.5 Phenylpropanoid CSE medium pass
Cmedscaffold_1840083400.7 Phenylpropanoid CSE low borderline
Cmedscaffold_188690085730.1 Phenylpropanoid CSE low borderline
Cmedscaffold_1980090600.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1980090620.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1980090630.1 Phenylpropanoid CSE medium pass
Cmedscaffold_1990090950.1 Phenylpropanoid CSE medium pass
Cmedscaffold_2280109020.1 Phenylpropanoid CSE medium pass
Cmedscaffold_2430117740.1 Phenylpropanoid CSE medium pass
Cmedscaffold_2430117750.1 Phenylpropanoid CSE medium pass
Cmedscaffold_2860141000.1 Phenylpropanoid CSE medium pass
Cmedscaffold_2860141010.1 Phenylpropanoid CSE medium pass
Cmedscaffold_2860141020.1 Phenylpropanoid CSE medium pass
Cmedscaffold_292_20144470.1 Phenylpropanoid CSE medium pass
Cmedscaffold_2980146030.1 Phenylpropanoid CSE medium pass
Cmedscaffold_33010163160.1 Phenylpropanoid CSE medium pass
Cmedscaffold_380185400.1 Phenylpropanoid CSE medium pass
Cmedscaffold_3840188220.1 Phenylpropanoid CSE medium pass
Cmedscaffold_3840188340.1 Phenylpropanoid CSE medium pass
Cmedscaffold_3850188620.1 Phenylpropanoid CSE medium pass
Cmedscaffold_4310207990.1 Phenylpropanoid CSE medium pass
Cmedscaffold_4490214010.1 Phenylpropanoid CSE medium pass
Cmedscaffold_50280230680.1 Phenylpropanoid CSE medium pass
Cmedscaffold_570247920.1 Phenylpropanoid CSE medium pass
Cmedscaffold_6100256630.1 Phenylpropanoid CSE medium pass
Cmedscaffold_6120257120.1 Phenylpropanoid CSE medium pass
Cmedscaffold_6120257120.2 Phenylpropanoid CSE medium pass
Cmedscaffold_730286030.1 Phenylpropanoid CSE medium pass
Cmedscaffold_7680292030.1 Phenylpropanoid CSE medium pass
Cmedscaffold_7680292030.2 Phenylpropanoid CSE medium pass
Cmedscaffold_7680292120.1 Phenylpropanoid CSE medium pass
Cmedscaffold_8240302570.1 Phenylpropanoid CSE medium pass
Cmedscaffold_9630322740.1 Phenylpropanoid CSE medium pass