PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
Cmedscaffold_1010002200.2 Alkaloid IO low borderline
Cmedscaffold_1010002200.3 Alkaloid IO low borderline
Cmedscaffold_1080010710.1 Alkaloid IO medium borderline
Cmedscaffold_1080010770.1 Alkaloid IO medium borderline
Cmedscaffold_110014280.1 Alkaloid IO medium borderline
Cmedscaffold_1170022220.1 Alkaloid IO medium borderline
Cmedscaffold_120025400.2 Alkaloid IO low borderline
Cmedscaffold_120025400.4 Alkaloid IO low borderline
Cmedscaffold_1290034990.1 Alkaloid IO medium borderline
Cmedscaffold_13640041650.1 Alkaloid IO medium borderline
Cmedscaffold_1430047800.1 Alkaloid IO medium borderline
Cmedscaffold_1550056610.1 Alkaloid IO low borderline
Cmedscaffold_16470067690.1 Alkaloid IO medium borderline
Cmedscaffold_17590075940.1 Alkaloid IO medium borderline
Cmedscaffold_1800081060.1 Alkaloid IO medium borderline
Cmedscaffold_180079730.1 Alkaloid IO medium borderline
Cmedscaffold_180079750.1 Alkaloid IO medium borderline
Cmedscaffold_180079760.1 Alkaloid IO medium borderline
Cmedscaffold_180079770.1 Alkaloid IO medium borderline
Cmedscaffold_180079780.1 Alkaloid IO medium borderline
Cmedscaffold_18510084090.1 Alkaloid IO medium borderline
Cmedscaffold_20990098960.1 Alkaloid IO medium borderline
Cmedscaffold_21020100560.1 Alkaloid IO medium borderline
Cmedscaffold_21290101530.1 Alkaloid IO medium borderline
Cmedscaffold_2290109340.1 Alkaloid IO medium borderline
Cmedscaffold_2290109430.1 Alkaloid IO medium borderline
Cmedscaffold_240115630.1 Alkaloid IO medium borderline
Cmedscaffold_240115650.1 Alkaloid IO medium borderline
Cmedscaffold_2420117250.1 Alkaloid IO medium borderline
Cmedscaffold_270131260.1 Alkaloid IO medium borderline
Cmedscaffold_280137650.1 Alkaloid IO medium borderline
Cmedscaffold_2830139240.3 Alkaloid IO medium borderline
Cmedscaffold_30260149700.1 Alkaloid IO low borderline
Cmedscaffold_3060150790.1 Alkaloid IO medium borderline
Cmedscaffold_32940162570.1 Alkaloid IO low borderline
Cmedscaffold_350172090.2 Alkaloid IO low borderline
Cmedscaffold_3540173970.1 Alkaloid IO medium borderline
Cmedscaffold_3590175760.1 Alkaloid IO medium borderline
Cmedscaffold_37530183500.1 Alkaloid IO low borderline
Cmedscaffold_3770184130.1 Alkaloid IO low borderline
Cmedscaffold_3770184150.1 Alkaloid IO low borderline
Cmedscaffold_380185580.1 Alkaloid IO medium borderline
Cmedscaffold_380186510.1 Alkaloid IO medium borderline
Cmedscaffold_3930192650.1 Alkaloid IO medium borderline
Cmedscaffold_500229740.1 Alkaloid IO medium borderline
Cmedscaffold_500229750.1 Alkaloid IO medium borderline
Cmedscaffold_5030230890.1 Alkaloid IO medium borderline
Cmedscaffold_5690246380.1 Alkaloid IO medium borderline
Cmedscaffold_5780249150.1 Alkaloid IO medium borderline
Cmedscaffold_590252150.1 Alkaloid IO low borderline