PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
Cmedscaffold_109190011780.1 Alkaloid LAMT medium borderline
Cmedscaffold_110013130.1 Alkaloid LAMT low borderline
Cmedscaffold_1130018080.1 Alkaloid LAMT medium borderline
Cmedscaffold_1130018080.2 Alkaloid LAMT medium borderline
Cmedscaffold_120025650.1 Alkaloid LAMT medium borderline
Cmedscaffold_12740033020.1 Alkaloid LAMT medium borderline
Cmedscaffold_1350039880.1 Alkaloid LAMT medium borderline
Cmedscaffold_14980052830.1 Alkaloid LAMT medium borderline
Cmedscaffold_1930088100.1 Alkaloid LAMT medium borderline
Cmedscaffold_1930088150.1 Alkaloid LAMT medium borderline
Cmedscaffold_1930088160.1 Alkaloid LAMT medium borderline
Cmedscaffold_1930088170.1 Alkaloid LAMT medium borderline
Cmedscaffold_20650097700.1 Alkaloid LAMT medium borderline
Cmedscaffold_20650097710.1 Alkaloid LAMT medium borderline
Cmedscaffold_20650097730.1 Alkaloid LAMT medium borderline
Cmedscaffold_210099510.1 Alkaloid LAMT medium borderline
Cmedscaffold_210099510.2 Alkaloid LAMT medium borderline
Cmedscaffold_23280111700.1 Alkaloid LAMT medium borderline
Cmedscaffold_23280111700.2 Alkaloid LAMT medium borderline
Cmedscaffold_2750135010.1 Alkaloid LAMT low borderline
Cmedscaffold_2890141680.1 Alkaloid LAMT medium borderline
Cmedscaffold_32150159260.1 Alkaloid LAMT medium borderline
Cmedscaffold_350171530.1 Alkaloid LAMT medium borderline
Cmedscaffold_350171540.1 Alkaloid LAMT medium borderline
Cmedscaffold_350171550.1 Alkaloid LAMT medium borderline
Cmedscaffold_4090199090.1 Alkaloid LAMT medium borderline
Cmedscaffold_410199980.1 Alkaloid LAMT medium borderline
Cmedscaffold_410199990.1 Alkaloid LAMT medium borderline
Cmedscaffold_410200000.1 Alkaloid LAMT medium borderline
Cmedscaffold_41750202760.1 Alkaloid LAMT medium borderline
Cmedscaffold_590252020.1 Alkaloid LAMT medium pass
Cmedscaffold_670269390.1 Alkaloid LAMT medium pass
Cmedscaffold_670269390.2 Alkaloid LAMT medium pass
Cmedscaffold_73830286980.1 Alkaloid LAMT medium borderline
Cmedscaffold_73830286980.2 Alkaloid LAMT medium borderline
Cmedscaffold_83100304020.1 Alkaloid LAMT medium borderline
Cmedscaffold_8570307250.1 Alkaloid LAMT medium borderline
Cmedscaffold_90070315020.1 Alkaloid LAMT medium borderline