PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Cmedscaffold_1250031080.1 Alkaloid GS high pass
Cmedscaffold_1250031090.1 Alkaloid GS high pass
Cmedscaffold_1250031100.1 Alkaloid GS high pass
Cmedscaffold_1380043350.1 Alkaloid GS low borderline
Cmedscaffold_1380043350.2 Alkaloid GS low borderline
Cmedscaffold_1380043350.3 Alkaloid GS low borderline
Cmedscaffold_2040096710.1 Alkaloid GS low borderline
Cmedscaffold_2090098400.1 Alkaloid GS low borderline
Cmedscaffold_2190104320.1 Alkaloid GS low borderline
Cmedscaffold_2620127450.1 Alkaloid GS low borderline
Cmedscaffold_2730133660.1 Alkaloid GS high pass
Cmedscaffold_300148220.1 Alkaloid GS medium pass
Cmedscaffold_300148220.2 Alkaloid GS medium pass
Cmedscaffold_300148220.3 Alkaloid GS medium pass
Cmedscaffold_300148220.4 Alkaloid GS medium pass
Cmedscaffold_300148220.5 Alkaloid GS medium pass
Cmedscaffold_300148240.1 Alkaloid GS low borderline
Cmedscaffold_3280161960.1 Alkaloid GS medium pass
Cmedscaffold_3280161960.2 Alkaloid GS medium pass
Cmedscaffold_3280161970.1 Alkaloid GS low borderline
Cmedscaffold_3280161980.1 Alkaloid GS medium pass
Cmedscaffold_3280161990.1 Alkaloid GS medium pass
Cmedscaffold_3280161990.2 Alkaloid GS medium pass
Cmedscaffold_3280161990.3 Alkaloid GS medium pass
Cmedscaffold_3280161990.4 Alkaloid GS medium pass
Cmedscaffold_3280161990.5 Alkaloid GS medium pass
Cmedscaffold_3280161990.6 Alkaloid GS medium pass
Cmedscaffold_3290162480.1 Alkaloid GS low borderline
Cmedscaffold_3290162480.2 Alkaloid GS low borderline
Cmedscaffold_3850188850.1 Alkaloid GS high pass
Cmedscaffold_4020197080.1 Alkaloid GS high pass
Cmedscaffold_5800249820.1 Alkaloid GS low borderline
Cmedscaffold_70277760.1 Alkaloid GS low borderline
Cmedscaffold_770292710.1 Alkaloid GS low borderline
Cmedscaffold_8510306690.1 Alkaloid GS high pass
Cmedscaffold_8510306690.2 Alkaloid GS high pass
Cmedscaffold_910316370.1 Alkaloid GS low borderline
Cmedscaffold_910316380.1 Alkaloid GS low borderline
Cmedscaffold_910316390.1 Alkaloid GS low borderline
Cmedscaffold_9770323750.1 Alkaloid GS low borderline
Cmedscaffold_9770323750.2 Alkaloid GS low borderline
Cmedscaffold_9770323750.3 Alkaloid GS low borderline
Cmedscaffold_9770323750.4 Alkaloid GS low borderline
Cmedscaffold_9770323750.5 Alkaloid GS low borderline