PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Cmedscaffold_1000001540.1 Flavonoid F3H medium borderline
Cmedscaffold_100920002170.1 Flavonoid F3H medium borderline
Cmedscaffold_1050007190.1 Flavonoid F3H medium borderline
Cmedscaffold_110013670.1 Flavonoid F3H medium borderline
Cmedscaffold_1110016080.1 Flavonoid F3H medium borderline
Cmedscaffold_1150019900.1 Flavonoid F3H medium borderline
Cmedscaffold_1190023410.1 Flavonoid F3H medium borderline
Cmedscaffold_1190023410.2 Flavonoid F3H medium borderline
Cmedscaffold_1200026850.1 Flavonoid F3H medium borderline
Cmedscaffold_120024820.1 Flavonoid F3H medium borderline
Cmedscaffold_12090027260.1 Flavonoid F3H medium borderline
Cmedscaffold_12090027270.1 Flavonoid F3H medium borderline
Cmedscaffold_1300036540.1 Flavonoid F3H medium borderline
Cmedscaffold_1300036680.1 Flavonoid F3H medium borderline
Cmedscaffold_1350040300.1 Flavonoid F3H medium borderline
Cmedscaffold_1370041960.1 Flavonoid F3H low borderline
Cmedscaffold_1370041980.1 Flavonoid F3H medium borderline
Cmedscaffold_1380043220.1 Flavonoid F3H medium borderline
Cmedscaffold_146110050780.1 Flavonoid F3H medium borderline
Cmedscaffold_14800052270.1 Flavonoid F3H medium borderline
Cmedscaffold_14800052290.1 Flavonoid F3H medium borderline
Cmedscaffold_1480051940.1 Flavonoid F3H medium borderline
Cmedscaffold_14960052760.1 Flavonoid F3H medium pass
Cmedscaffold_1520054490.1 Flavonoid F3H medium borderline
Cmedscaffold_1520054490.2 Flavonoid F3H medium borderline
Cmedscaffold_1580058520.1 Flavonoid F3H medium borderline
Cmedscaffold_160063320.1 Flavonoid F3H medium borderline
Cmedscaffold_1620065640.1 Flavonoid F3H low borderline
Cmedscaffold_1620065640.2 Flavonoid F3H low borderline
Cmedscaffold_16460067640.1 Flavonoid F3H medium borderline
Cmedscaffold_16460067650.1 Flavonoid F3H medium borderline
Cmedscaffold_16460067660.1 Flavonoid F3H medium borderline
Cmedscaffold_1680070300.1 Flavonoid F3H medium borderline
Cmedscaffold_1680070300.2 Flavonoid F3H medium borderline
Cmedscaffold_1680070310.1 Flavonoid F3H medium borderline
Cmedscaffold_1680070330.1 Flavonoid F3H medium borderline
Cmedscaffold_1760076180.1 Flavonoid F3H medium borderline
Cmedscaffold_1780078040.1 Flavonoid F3H medium borderline
Cmedscaffold_1780078050.1 Flavonoid F3H medium borderline
Cmedscaffold_1780078060.1 Flavonoid F3H medium borderline
Cmedscaffold_1780078080.1 Flavonoid F3H medium borderline
Cmedscaffold_1780078100.1 Flavonoid F3H low borderline
Cmedscaffold_19520089180.1 Flavonoid F3H medium borderline
Cmedscaffold_1980090390.1 Flavonoid F3H medium borderline
Cmedscaffold_20460096990.1 Flavonoid F3H medium borderline
Cmedscaffold_20600097650.1 Flavonoid F3H medium borderline
Cmedscaffold_2090098370.1 Flavonoid F3H low borderline
Cmedscaffold_2180103410.1 Flavonoid F3H medium borderline
Cmedscaffold_22380106730.1 Flavonoid F3H medium borderline
Cmedscaffold_22380106730.2 Flavonoid F3H medium borderline