Citrus medica (citrus_medica)
Imported from atlas release summary for Citrus medica.
2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2210
Candidate Genes
C4H
6.9%
C3'H/CYP98A
6.27%
BAHD
6.13%
CYP76
4.63%
IFS
4.34%
4CL
4.13%
T3O
3.45%
POD
3.36%
Other Families
60.8%
More Families (98)
NMT
185
3.22%
UGT
178
3.1%
F3H
168
2.93%
DWF4/CYP90B1
159
2.77%
CODM/T6ODM
124
2.16%
7DLGT
120
2.09%
F3'H/CYP75B
113
1.97%
BR6OX2/CYP85A2
107
1.86%
CYP71
100
1.74%
UFGT
85
1.48%
TPS
80
1.39%
GES
78
1.36%
CAS
78
1.36%
TRI/TRII
73
1.27%
SMT1/SMT2/SMT3
72
1.25%
IFR
69
1.2%
CYP90D1
64
1.11%
H6H
63
1.1%
G8O/G8H
63
1.1%
STR
60
1.04%
BBE
59
1.03%
T16H
58
1.01%
IO
56
0.98%
COR
50
0.87%
CAD
50
0.87%
RAS
50
0.87%
SGD
49
0.85%
HCT
46
0.8%
PYKS
45
0.78%
F3'5'H/CYP75A
45
0.78%
GS
44
0.77%
CSE
43
0.75%
COMT
41
0.71%
LAMT
38
0.66%
LAC
38
0.66%
F5H/CYP84A
35
0.61%
CPD/CYP90A1
33
0.57%
PMT
31
0.54%
ANR
31
0.54%
7DLH
30
0.52%
NCS
29
0.51%
FNS
29
0.51%
CCR
26
0.45%
SLS
25
0.44%
16OMT
23
0.4%
8HGO
22
0.38%
CYP51G1
22
0.38%
GGPPS
21
0.37%
CHS
20
0.35%
ANS/LDOX
19
0.33%
TAT
19
0.33%
PAL
18
0.31%
SQS/FDFT1
15
0.26%
AACT
15
0.26%
MPO
14
0.24%
6OMT_4OMT_SOMT
13
0.23%
CNMT
12
0.21%
BR6OX1/CYP85A1
12
0.21%
SQE
12
0.21%
MCT/IspD
12
0.21%
DFR
11
0.19%
DXR
11
0.19%
TYDC_DDC
10
0.17%
CCoAOMT
10
0.17%
ROT3/CYP90C1
10
0.17%
FPPS
10
0.17%
CYP719
9
0.16%
HPPR
9
0.16%
CPR
8
0.14%
HMGS
8
0.14%
MVD
8
0.14%
ODC
7
0.12%
FLS
7
0.12%
CHI
7
0.12%
DXS
7
0.12%
CYP80B1
6
0.1%
MVK
6
0.1%
XMT_MXMT_DXMT
5
0.09%
HYD1
5
0.09%
GPPS
5
0.09%
TDC
4
0.07%
SMO1/SMO2
4
0.07%
FK
4
0.07%
CMK/IspE
4
0.07%
ISY
3
0.05%
HDR/IspH
3
0.05%
PMK
3
0.05%
CYP80F1
2
0.03%
DWF7
2
0.03%
DWF1
2
0.03%
DWF5
2
0.03%
CPI1
2
0.03%
HMGR
2
0.03%
HDS/IspG
2
0.03%
ADC
1
0.02%
DET2
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 678 | 20 | BAHD (294) | View species results |
| Alkaloid pathway | 560 | 26 | NMT (112) | View species results |
| Phenylpropanoid pathway | 422 | 12 | POD (178) | View species results |
| Rosmarinic acid pathway | 212 | 7 | C4H (99) | View species results |
| Flavonoid pathway | 189 | 9 | UFGT (68) | View species results |
| Steroid pathway | 149 | 11 | CAS (66) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2418 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 448 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Cmedscaffold_11440019250.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cmedscaffold_1160021870.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cmedscaffold_1160021880.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cmedscaffold_1160021890.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Cmedscaffold_1160021900.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Cmedscaffold_1160021910.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Cmedscaffold_1160021920.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Cmedscaffold_14330047970.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Cmedscaffold_14330047970.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Cmedscaffold_14330047980.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Cmedscaffold_14330047980.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cmedscaffold_14330047980.3 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Cmedscaffold_14330047990.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cmedscaffold_14380048070.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_14380048070.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_1480051810.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Cmedscaffold_1480051820.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Cmedscaffold_1920087620.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cmedscaffold_21150101020.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cmedscaffold_2180103520.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_2180103520.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_2180103520.3 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_2180103520.4 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_2180103530.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_260125770.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cmedscaffold_260125860.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cmedscaffold_2630127800.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cmedscaffold_267810130410.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cmedscaffold_2800137930.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_280136940.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cmedscaffold_280136950.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cmedscaffold_280136960.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Cmedscaffold_280136970.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Cmedscaffold_2840140070.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cmedscaffold_2840140080.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cmedscaffold_39210192550.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Cmedscaffold_4170202690.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cmedscaffold_4170202690.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cmedscaffold_4170202690.3 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cmedscaffold_4590217290.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cmedscaffold_4610218400.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cmedscaffold_4820223620.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cmedscaffold_4880225000.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cmedscaffold_490225770.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Cmedscaffold_490225770.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Cmedscaffold_500229550.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Cmedscaffold_5270237460.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Cmedscaffold_5300238450.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Cmedscaffold_620259340.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Cmedscaffold_6210259550.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |