PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.68% Alkaloid pathway 25.34% Phenylpropanoid pathway 19.1% Rosmarinic acid pathway 9.59% Flavonoid pathway 8.55% Steroid pathway 6.74%
Family Distribution
C4H 6.9% C3'H/CYP98A 6.27% BAHD 6.13% CYP76 4.63% IFS 4.34% 4CL 4.13% T3O 3.45% POD 3.36%
Other Families 60.8%
More Families (98)
NMT 185 3.22% UGT 178 3.1% F3H 168 2.93% DWF4/CYP90B1 159 2.77% CODM/T6ODM 124 2.16% 7DLGT 120 2.09% F3'H/CYP75B 113 1.97% BR6OX2/CYP85A2 107 1.86% CYP71 100 1.74% UFGT 85 1.48% TPS 80 1.39% GES 78 1.36% CAS 78 1.36% TRI/TRII 73 1.27% SMT1/SMT2/SMT3 72 1.25% IFR 69 1.2% CYP90D1 64 1.11% H6H 63 1.1% G8O/G8H 63 1.1% STR 60 1.04% BBE 59 1.03% T16H 58 1.01% IO 56 0.98% COR 50 0.87% CAD 50 0.87% RAS 50 0.87% SGD 49 0.85% HCT 46 0.8% PYKS 45 0.78% F3'5'H/CYP75A 45 0.78% GS 44 0.77% CSE 43 0.75% COMT 41 0.71% LAMT 38 0.66% LAC 38 0.66% F5H/CYP84A 35 0.61% CPD/CYP90A1 33 0.57% PMT 31 0.54% ANR 31 0.54% 7DLH 30 0.52% NCS 29 0.51% FNS 29 0.51% CCR 26 0.45% SLS 25 0.44% 16OMT 23 0.4% 8HGO 22 0.38% CYP51G1 22 0.38% GGPPS 21 0.37% CHS 20 0.35% ANS/LDOX 19 0.33% TAT 19 0.33% PAL 18 0.31% SQS/FDFT1 15 0.26% AACT 15 0.26% MPO 14 0.24% 6OMT_4OMT_SOMT 13 0.23% CNMT 12 0.21% BR6OX1/CYP85A1 12 0.21% SQE 12 0.21% MCT/IspD 12 0.21% DFR 11 0.19% DXR 11 0.19% TYDC_DDC 10 0.17% CCoAOMT 10 0.17% ROT3/CYP90C1 10 0.17% FPPS 10 0.17% CYP719 9 0.16% HPPR 9 0.16% CPR 8 0.14% HMGS 8 0.14% MVD 8 0.14% ODC 7 0.12% FLS 7 0.12% CHI 7 0.12% DXS 7 0.12% CYP80B1 6 0.1% MVK 6 0.1% XMT_MXMT_DXMT 5 0.09% HYD1 5 0.09% GPPS 5 0.09% TDC 4 0.07% SMO1/SMO2 4 0.07% FK 4 0.07% CMK/IspE 4 0.07% ISY 3 0.05% HDR/IspH 3 0.05% PMK 3 0.05% CYP80F1 2 0.03% DWF7 2 0.03% DWF1 2 0.03% DWF5 2 0.03% CPI1 2 0.03% HMGR 2 0.03% HDS/IspG 2 0.03% ADC 1 0.02% DET2 1 0.02% IDI 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
Cmedscaffold_78410295320.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Cmedscaffold_80570299900.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Cmedscaffold_85950307400.1 Alkaloid BBE medium borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
Cmedscaffold_890310820.1 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
Cmedscaffold_9510321740.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Cmedscaffold_9510321750.1 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Cmedscaffold_9510321760.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
Cmedscaffold_9510321760.2 Alkaloid BBE medium borderline BBE__00005__sp_Q93ZA3_BBE13_ARATH
Cmedscaffold_96570323130.1 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH