PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Cmedscaffold_2280108970.1 Flavonoid F3H low borderline
Cmedscaffold_2280108970.2 Flavonoid F3H low borderline
Cmedscaffold_2280108970.3 Flavonoid F3H low borderline
Cmedscaffold_2460119220.1 Flavonoid F3H medium borderline
Cmedscaffold_2460119220.2 Flavonoid F3H medium borderline
Cmedscaffold_2460119220.3 Flavonoid F3H medium borderline
Cmedscaffold_25990124590.1 Flavonoid F3H medium borderline
Cmedscaffold_26270127720.1 Flavonoid F3H medium borderline
Cmedscaffold_2650128970.1 Flavonoid F3H medium borderline
Cmedscaffold_2690130930.1 Flavonoid F3H medium borderline
Cmedscaffold_2690130940.1 Flavonoid F3H medium borderline
Cmedscaffold_2720133420.1 Flavonoid F3H medium borderline
Cmedscaffold_2720133430.1 Flavonoid F3H medium borderline
Cmedscaffold_280137130.1 Flavonoid F3H medium borderline
Cmedscaffold_2860140500.1 Flavonoid F3H medium borderline
Cmedscaffold_29020143330.1 Flavonoid F3H low borderline
Cmedscaffold_30147460.1 Flavonoid F3H low borderline
Cmedscaffold_30147470.1 Flavonoid F3H medium borderline
Cmedscaffold_30147830.1 Flavonoid F3H medium borderline
Cmedscaffold_30147840.1 Flavonoid F3H medium borderline
Cmedscaffold_3050150300.1 Flavonoid F3H low borderline
Cmedscaffold_310152070.1 Flavonoid F3H medium borderline
Cmedscaffold_32550160810.1 Flavonoid F3H medium borderline
Cmedscaffold_32550160810.2 Flavonoid F3H low borderline
Cmedscaffold_3480169380.1 Flavonoid F3H medium pass
Cmedscaffold_3480169390.1 Flavonoid F3H medium pass
Cmedscaffold_34_10170030.1 Flavonoid F3H medium borderline
Cmedscaffold_34_20170420.1 Flavonoid F3H low borderline
Cmedscaffold_34_20170430.1 Flavonoid F3H medium pass
Cmedscaffold_3700181630.1 Flavonoid F3H medium borderline
Cmedscaffold_37250182790.1 Flavonoid F3H medium pass
Cmedscaffold_378_10184570.1 Flavonoid F3H medium borderline
Cmedscaffold_390190910.1 Flavonoid F3H medium borderline
Cmedscaffold_410199380.1 Flavonoid F3H medium pass
Cmedscaffold_410199380.2 Flavonoid F3H low borderline
Cmedscaffold_4120201590.1 Flavonoid F3H low borderline
Cmedscaffold_420203310.1 Flavonoid F3H low borderline
Cmedscaffold_430207120.1 Flavonoid F3H medium borderline
Cmedscaffold_44000211550.1 Flavonoid F3H medium borderline
Cmedscaffold_440210760.1 Flavonoid F3H medium borderline
Cmedscaffold_4710220470.1 Flavonoid F3H medium borderline
Cmedscaffold_4730220690.1 Flavonoid F3H low borderline
Cmedscaffold_4730220710.1 Flavonoid F3H low borderline
Cmedscaffold_50228170.1 Flavonoid F3H medium borderline
Cmedscaffold_50229220.1 Flavonoid F3H medium borderline
Cmedscaffold_50229220.2 Flavonoid F3H low borderline
Cmedscaffold_50229250.1 Flavonoid F3H medium borderline
Cmedscaffold_50229250.2 Flavonoid F3H medium borderline
Cmedscaffold_510232370.1 Flavonoid F3H medium borderline
Cmedscaffold_510232390.1 Flavonoid F3H medium borderline