PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Cmedscaffold_2590124260.1 Alkaloid T3O medium pass
Cmedscaffold_26290127740.1 Alkaloid T3O medium borderline
Cmedscaffold_26760130370.1 Alkaloid T3O medium borderline
Cmedscaffold_270131220.1 Alkaloid T3O medium borderline
Cmedscaffold_270131270.1 Alkaloid T3O low borderline
Cmedscaffold_270131590.1 Alkaloid T3O medium borderline
Cmedscaffold_2790136810.1 Alkaloid T3O medium borderline
Cmedscaffold_2830139580.1 Alkaloid T3O medium borderline
Cmedscaffold_2830139590.1 Alkaloid T3O medium borderline
Cmedscaffold_2850140210.1 Alkaloid T3O medium borderline
Cmedscaffold_2850140250.1 Alkaloid T3O medium borderline
Cmedscaffold_2850140260.1 Alkaloid T3O medium borderline
Cmedscaffold_2910143410.1 Alkaloid T3O medium borderline
Cmedscaffold_2910143480.1 Alkaloid T3O medium borderline
Cmedscaffold_2910143500.1 Alkaloid T3O medium borderline
Cmedscaffold_2940144980.1 Alkaloid T3O medium pass
Cmedscaffold_30147750.1 Alkaloid T3O medium borderline
Cmedscaffold_30870151600.1 Alkaloid T3O medium borderline
Cmedscaffold_34070167030.1 Alkaloid T3O medium borderline
Cmedscaffold_3500172810.1 Alkaloid T3O medium pass
Cmedscaffold_350172090.1 Alkaloid T3O medium pass
Cmedscaffold_350172110.1 Alkaloid T3O medium borderline
Cmedscaffold_360176600.1 Alkaloid T3O low borderline
Cmedscaffold_3700181960.1 Alkaloid T3O medium borderline
Cmedscaffold_3700181980.1 Alkaloid T3O medium borderline
Cmedscaffold_370180940.1 Alkaloid T3O medium pass
Cmedscaffold_3720182510.1 Alkaloid T3O medium borderline
Cmedscaffold_3770184440.1 Alkaloid T3O medium borderline
Cmedscaffold_3770184450.1 Alkaloid T3O medium borderline
Cmedscaffold_3790184760.2 Alkaloid T3O medium pass
Cmedscaffold_3790184760.4 Alkaloid T3O medium pass
Cmedscaffold_3790184760.6 Alkaloid T3O medium pass
Cmedscaffold_380185590.1 Alkaloid T3O medium borderline
Cmedscaffold_3930192640.1 Alkaloid T3O medium borderline
Cmedscaffold_40195190.1 Alkaloid T3O medium borderline
Cmedscaffold_41810202980.1 Alkaloid T3O medium pass
Cmedscaffold_4420212010.1 Alkaloid T3O medium borderline
Cmedscaffold_480222040.1 Alkaloid T3O low borderline
Cmedscaffold_4850224250.1 Alkaloid T3O medium pass
Cmedscaffold_4860224520.1 Alkaloid T3O medium borderline
Cmedscaffold_49530227170.1 Alkaloid T3O medium borderline
Cmedscaffold_500229620.1 Alkaloid T3O medium borderline
Cmedscaffold_500229780.1 Alkaloid T3O medium borderline
Cmedscaffold_5030230910.1 Alkaloid T3O medium borderline
Cmedscaffold_5030230910.2 Alkaloid T3O medium borderline
Cmedscaffold_5030230930.1 Alkaloid T3O medium borderline
Cmedscaffold_5140234250.1 Alkaloid T3O low borderline
Cmedscaffold_5220236500.1 Alkaloid T3O medium pass
Cmedscaffold_550242160.1 Alkaloid T3O medium pass
Cmedscaffold_550242160.2 Alkaloid T3O medium pass