PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2858
Candidate Protein Records
2210
Pathway-Level Records
5742
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
Cmedscaffold_550242160.3 Alkaloid T3O medium pass
Cmedscaffold_5840250730.1 Alkaloid T3O medium borderline
Cmedscaffold_5840250740.1 Alkaloid T3O medium borderline
Cmedscaffold_590252130.1 Alkaloid T3O low borderline
Cmedscaffold_590252140.1 Alkaloid T3O low borderline
Cmedscaffold_5970254230.1 Alkaloid T3O low borderline
Cmedscaffold_610256540.1 Alkaloid T3O low borderline
Cmedscaffold_630261180.1 Alkaloid T3O low borderline
Cmedscaffold_630261230.1 Alkaloid T3O medium borderline
Cmedscaffold_630261240.1 Alkaloid T3O medium borderline
Cmedscaffold_630261950.1 Alkaloid T3O medium pass
Cmedscaffold_630261960.1 Alkaloid T3O medium pass
Cmedscaffold_670269870.1 Alkaloid T3O medium borderline
Cmedscaffold_670269900.1 Alkaloid T3O medium borderline
Cmedscaffold_670269910.1 Alkaloid T3O medium borderline
Cmedscaffold_670269930.1 Alkaloid T3O medium borderline
Cmedscaffold_670269940.1 Alkaloid T3O medium borderline
Cmedscaffold_670269970.1 Alkaloid T3O medium borderline
Cmedscaffold_670269980.1 Alkaloid T3O medium borderline
Cmedscaffold_710281380.1 Alkaloid T3O medium borderline
Cmedscaffold_710281660.1 Alkaloid T3O medium borderline
Cmedscaffold_730284990.1 Alkaloid T3O medium borderline
Cmedscaffold_730285660.1 Alkaloid T3O medium borderline
Cmedscaffold_7370286790.1 Alkaloid T3O medium borderline
Cmedscaffold_740287590.1 Alkaloid T3O medium borderline
Cmedscaffold_7490288790.1 Alkaloid T3O medium borderline
Cmedscaffold_7490288860.1 Alkaloid T3O medium borderline
Cmedscaffold_7730293570.1 Alkaloid T3O medium pass
Cmedscaffold_7820294850.1 Alkaloid T3O medium borderline
Cmedscaffold_800298910.1 Alkaloid T3O medium pass
Cmedscaffold_80298030.1 Alkaloid T3O medium borderline
Cmedscaffold_80298090.1 Alkaloid T3O medium borderline
Cmedscaffold_810300640.1 Alkaloid T3O medium borderline
Cmedscaffold_820301560.1 Alkaloid T3O medium borderline
Cmedscaffold_820301910.1 Alkaloid T3O medium borderline
Cmedscaffold_890310750.1 Alkaloid T3O medium borderline
Cmedscaffold_890310780.1 Alkaloid T3O medium borderline
Cmedscaffold_8910311290.1 Alkaloid T3O medium pass
Cmedscaffold_8910311300.1 Alkaloid T3O medium pass
Cmedscaffold_910316480.1 Alkaloid T3O medium borderline
Cmedscaffold_910316480.2 Alkaloid T3O medium borderline
Cmedscaffold_910316480.3 Alkaloid T3O medium borderline
Cmedscaffold_9390319820.1 Alkaloid T3O medium borderline
Cmedscaffold_9390319830.1 Alkaloid T3O medium borderline
Cmedscaffold_9390319910.1 Alkaloid T3O medium pass
Cmedscaffold_950321630.1 Alkaloid T3O medium borderline
Cmedscaffold_9630322760.1 Alkaloid T3O medium borderline
Cmedscaffold_980324620.1 Alkaloid T3O low borderline