PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
Cmedscaffold_420203280.1 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Cmedscaffold_4230205370.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_4230205380.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_4230205400.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_4230205430.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_4490213990.1 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
Cmedscaffold_45650216410.1 Terpenoid TPS medium pass TPS__00168__sp_Q94JS8_FARS_CITJU
Cmedscaffold_460217500.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_460217970.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_51880235180.1 Terpenoid TPS medium pass TPS__00025__sp_A0A1V0QSG6_TS4FN_CANSA
Cmedscaffold_5540243540.1 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
Cmedscaffold_5540243540.2 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
Cmedscaffold_5540243540.3 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
Cmedscaffold_5700248240.1 Terpenoid TPS medium pass TPS__00005__sp_A0A140KFG9_TPS1_CAMBE
Cmedscaffold_6840272440.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_6840272500.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_700279020.1 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Cmedscaffold_70230280330.1 Terpenoid TPS medium pass TPS__00025__sp_A0A1V0QSG6_TS4FN_CANSA
Cmedscaffold_7050280680.1 Terpenoid TPS medium pass TPS__00130__sp_J7LQ09_TPS7_PHYDL
Cmedscaffold_7050280700.1 Terpenoid TPS medium pass TPS__00130__sp_J7LQ09_TPS7_PHYDL
Cmedscaffold_7370286770.1 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
Cmedscaffold_7370286800.1 Terpenoid TPS medium pass TPS__00025__sp_A0A1V0QSG6_TS4FN_CANSA
Cmedscaffold_740287490.1 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
Cmedscaffold_7860295490.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Cmedscaffold_7860295500.1 Terpenoid TPS medium pass TPS__00126__sp_J7LH11_TPS8_PHYDL
Cmedscaffold_7860295510.1 Terpenoid TPS low borderline TPS__00062__sp_B9T536_TPS10_RICCO
Cmedscaffold_7860295520.1 Terpenoid TPS medium pass TPS__00130__sp_J7LQ09_TPS7_PHYDL
Cmedscaffold_830303280.1 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Cmedscaffold_830303290.1 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
Cmedscaffold_85270306780.1 Terpenoid TPS medium pass TPS__00134__sp_J9R388_TPS10_SELML