PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
Cmedscaffold_1030004220.1 Flavonoid UFGT medium pass
Cmedscaffold_1060008740.1 Flavonoid UFGT medium pass
Cmedscaffold_1160021720.1 Flavonoid UFGT medium pass
Cmedscaffold_120026470.1 Flavonoid UFGT medium pass
Cmedscaffold_120026480.1 Flavonoid UFGT medium pass
Cmedscaffold_120026490.1 Flavonoid UFGT medium pass
Cmedscaffold_1250031170.1 Flavonoid UFGT high pass
Cmedscaffold_1290034290.1 Flavonoid UFGT high pass
Cmedscaffold_13140037850.1 Flavonoid UFGT high pass
Cmedscaffold_1320038300.1 Flavonoid UFGT medium pass
Cmedscaffold_1320038310.1 Flavonoid UFGT medium pass
Cmedscaffold_135300040820.1 Flavonoid UFGT low borderline
Cmedscaffold_1390044320.1 Flavonoid UFGT high pass
Cmedscaffold_14140046230.1 Flavonoid UFGT medium pass
Cmedscaffold_14670050840.1 Flavonoid UFGT medium pass
Cmedscaffold_151_10053680.1 Flavonoid UFGT medium pass
Cmedscaffold_151_20053730.1 Flavonoid UFGT medium pass
Cmedscaffold_151_20053750.1 Flavonoid UFGT medium pass
Cmedscaffold_15290054890.1 Flavonoid UFGT medium pass
Cmedscaffold_15290054900.1 Flavonoid UFGT medium pass
Cmedscaffold_16530068620.1 Flavonoid UFGT high pass
Cmedscaffold_16530068630.1 Flavonoid UFGT medium pass
Cmedscaffold_16530068640.1 Flavonoid UFGT low borderline
Cmedscaffold_1820082310.1 Flavonoid UFGT medium pass
Cmedscaffold_1860084520.1 Flavonoid UFGT high pass
Cmedscaffold_1870084910.1 Flavonoid UFGT low borderline
Cmedscaffold_1920087760.1 Flavonoid UFGT medium pass
Cmedscaffold_19340088430.1 Flavonoid UFGT high pass
Cmedscaffold_20092610.1 Flavonoid UFGT medium pass
Cmedscaffold_2040096490.1 Flavonoid UFGT high pass
Cmedscaffold_2040096500.1 Flavonoid UFGT medium pass
Cmedscaffold_210099250.1 Flavonoid UFGT medium pass
Cmedscaffold_2150102400.1 Flavonoid UFGT low borderline
Cmedscaffold_2150102410.1 Flavonoid UFGT high pass
Cmedscaffold_2150102420.1 Flavonoid UFGT medium pass
Cmedscaffold_21780102890.1 Flavonoid UFGT high pass
Cmedscaffold_2190104280.1 Flavonoid UFGT high pass
Cmedscaffold_220105070.1 Flavonoid UFGT medium pass
Cmedscaffold_2280109200.1 Flavonoid UFGT high pass
Cmedscaffold_240115900.1 Flavonoid UFGT low borderline
Cmedscaffold_240115930.1 Flavonoid UFGT low borderline
Cmedscaffold_24790119460.1 Flavonoid UFGT high pass
Cmedscaffold_2710132660.1 Flavonoid UFGT medium pass
Cmedscaffold_27130132820.1 Flavonoid UFGT high pass
Cmedscaffold_27130132830.1 Flavonoid UFGT low borderline
Cmedscaffold_280137040.1 Flavonoid UFGT medium pass
Cmedscaffold_2860140580.1 Flavonoid UFGT medium pass
Cmedscaffold_2860140590.1 Flavonoid UFGT high pass
Cmedscaffold_2860141080.1 Flavonoid UFGT low borderline
Cmedscaffold_290142400.1 Flavonoid UFGT low borderline