PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2858
Candidate Protein Records
2210
Pathway-Level Records
5742
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cmedscaffold_220104580.1 Terpenoid CYP76 medium borderline
Cmedscaffold_220104610.1 Terpenoid CYP76 medium borderline
Cmedscaffold_220104890.1 Terpenoid CYP76 medium borderline
Cmedscaffold_220104900.1 Terpenoid CYP76 medium borderline
Cmedscaffold_220104970.1 Terpenoid CYP76 medium pass
Cmedscaffold_220104980.1 Terpenoid CYP76 medium borderline
Cmedscaffold_2240107030.1 Terpenoid CYP76 medium pass
Cmedscaffold_2250107560.1 Terpenoid CYP76 low borderline
Cmedscaffold_2250107560.2 Terpenoid CYP76 low borderline
Cmedscaffold_22730108540.1 Terpenoid CYP76 medium pass
Cmedscaffold_2280109220.1 Terpenoid CYP76 medium pass
Cmedscaffold_2280109230.1 Terpenoid CYP76 medium pass
Cmedscaffold_2280109240.1 Terpenoid CYP76 medium borderline
Cmedscaffold_2290109330.1 Terpenoid CYP76 low borderline
Cmedscaffold_2290109340.1 Terpenoid CYP76 medium pass
Cmedscaffold_2290109350.1 Terpenoid CYP76 low borderline
Cmedscaffold_2290109360.1 Terpenoid CYP76 medium pass
Cmedscaffold_2290109370.1 Terpenoid CYP76 low borderline
Cmedscaffold_2290109380.1 Terpenoid CYP76 low borderline
Cmedscaffold_2290109400.1 Terpenoid CYP76 low borderline
Cmedscaffold_2290109410.1 Terpenoid CYP76 low borderline
Cmedscaffold_2290109420.1 Terpenoid CYP76 medium pass
Cmedscaffold_2290109430.1 Terpenoid CYP76 medium pass
Cmedscaffold_2290109440.1 Terpenoid CYP76 low borderline
Cmedscaffold_2320111440.1 Terpenoid CYP76 medium pass
Cmedscaffold_2340111800.1 Terpenoid CYP76 low borderline
Cmedscaffold_2400116650.1 Terpenoid CYP76 medium borderline
Cmedscaffold_2400116660.1 Terpenoid CYP76 medium pass
Cmedscaffold_240115630.1 Terpenoid CYP76 medium borderline
Cmedscaffold_240115640.1 Terpenoid CYP76 low borderline
Cmedscaffold_240115650.1 Terpenoid CYP76 medium pass
Cmedscaffold_240115660.1 Terpenoid CYP76 medium pass
Cmedscaffold_240115680.1 Terpenoid CYP76 medium borderline
Cmedscaffold_240115690.1 Terpenoid CYP76 medium borderline
Cmedscaffold_240115700.1 Terpenoid CYP76 medium pass
Cmedscaffold_240115710.1 Terpenoid CYP76 medium pass
Cmedscaffold_240115730.1 Terpenoid CYP76 medium pass
Cmedscaffold_240115740.1 Terpenoid CYP76 medium pass
Cmedscaffold_240115750.1 Terpenoid CYP76 medium pass
Cmedscaffold_240115770.1 Terpenoid CYP76 medium borderline
Cmedscaffold_240115780.1 Terpenoid CYP76 medium borderline
Cmedscaffold_2420117250.1 Terpenoid CYP76 low borderline
Cmedscaffold_2440118390.1 Terpenoid CYP76 low borderline
Cmedscaffold_2500121600.1 Terpenoid CYP76 medium borderline
Cmedscaffold_2500121610.1 Terpenoid CYP76 medium borderline
Cmedscaffold_2500121620.1 Terpenoid CYP76 medium borderline
Cmedscaffold_2560123500.1 Terpenoid CYP76 medium borderline
Cmedscaffold_2570124120.1 Terpenoid CYP76 low borderline
Cmedscaffold_260126140.2 Terpenoid CYP76 low borderline
Cmedscaffold_260126140.4 Terpenoid CYP76 low borderline