PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2858
Candidate Protein Records
2210
Pathway-Level Records
5742
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cmedscaffold_6990274680.4 Terpenoid HMGS high pass
Cmedscaffold_6990274680.5 Terpenoid HMGS high pass
Cmedscaffold_6990274680.6 Terpenoid HMGS high pass
Cmedscaffold_378_10184600.1 Terpenoid IDI medium pass
Cmedscaffold_11700022630.1 Terpenoid MCT/IspD low borderline
Cmedscaffold_11700022630.2 Terpenoid MCT/IspD low borderline
Cmedscaffold_1240029810.1 Terpenoid MCT/IspD low borderline
Cmedscaffold_1240029810.2 Terpenoid MCT/IspD low borderline
Cmedscaffold_1240029810.3 Terpenoid MCT/IspD low borderline
Cmedscaffold_1240029810.5 Terpenoid MCT/IspD low borderline
Cmedscaffold_2650128960.1 Terpenoid MCT/IspD low borderline
Cmedscaffold_34140167340.1 Terpenoid MCT/IspD low borderline
Cmedscaffold_3620178050.1 Terpenoid MCT/IspD high pass
Cmedscaffold_3620178050.2 Terpenoid MCT/IspD high pass
Cmedscaffold_5020230560.1 Terpenoid MCT/IspD low borderline
Cmedscaffold_5020230560.4 Terpenoid MCT/IspD low borderline
Cmedscaffold_420203800.1 Terpenoid MDS/IspF high pass
Cmedscaffold_18220082650.1 Terpenoid MVD low borderline
Cmedscaffold_4130202040.1 Terpenoid MVD low borderline
Cmedscaffold_4130202040.2 Terpenoid MVD low borderline
Cmedscaffold_4130202040.3 Terpenoid MVD low borderline
Cmedscaffold_5890251650.1 Terpenoid MVD medium pass
Cmedscaffold_80297910.1 Terpenoid MVD low borderline
Cmedscaffold_80297930.1 Terpenoid MVD low borderline
Cmedscaffold_80297950.1 Terpenoid MVD low borderline
Cmedscaffold_1290034830.1 Terpenoid MVK low borderline
Cmedscaffold_12940035130.1 Terpenoid MVK low borderline
Cmedscaffold_3840188300.1 Terpenoid MVK low borderline
Cmedscaffold_390191130.1 Terpenoid MVK low borderline
Cmedscaffold_390191130.2 Terpenoid MVK low borderline
Cmedscaffold_9930325540.1 Terpenoid MVK medium pass
Cmedscaffold_270131540.1 Terpenoid PMK high pass
Cmedscaffold_270131540.2 Terpenoid PMK high pass
Cmedscaffold_270131540.3 Terpenoid PMK high pass
Cmedscaffold_10260003810.1 Terpenoid TPS medium pass
Cmedscaffold_10280003850.1 Terpenoid TPS medium pass
Cmedscaffold_10280003860.1 Terpenoid TPS medium pass
Cmedscaffold_10280003870.1 Terpenoid TPS medium pass
Cmedscaffold_10450006760.1 Terpenoid TPS medium pass
Cmedscaffold_106300009130.1 Terpenoid TPS medium pass
Cmedscaffold_1190023980.1 Terpenoid TPS medium pass
Cmedscaffold_1260032070.1 Terpenoid TPS medium pass
Cmedscaffold_1260032080.1 Terpenoid TPS medium pass
Cmedscaffold_1260032110.1 Terpenoid TPS medium pass
Cmedscaffold_1260032120.1 Terpenoid TPS medium pass
Cmedscaffold_1260032190.1 Terpenoid TPS medium pass
Cmedscaffold_1260032200.1 Terpenoid TPS medium pass
Cmedscaffold_128220033850.1 Terpenoid TPS medium pass
Cmedscaffold_1300036150.1 Terpenoid TPS medium pass
Cmedscaffold_1300036160.1 Terpenoid TPS medium pass