PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2858
Candidate Protein Records
2210
Pathway-Level Records
5742
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Cmedscaffold_2830139240.3 Alkaloid IO medium borderline
Cmedscaffold_30260149700.1 Alkaloid IO low borderline
Cmedscaffold_3060150790.1 Alkaloid IO medium borderline
Cmedscaffold_32940162570.1 Alkaloid IO low borderline
Cmedscaffold_350172090.2 Alkaloid IO low borderline
Cmedscaffold_3540173970.1 Alkaloid IO medium borderline
Cmedscaffold_3590175760.1 Alkaloid IO medium borderline
Cmedscaffold_37530183500.1 Alkaloid IO low borderline
Cmedscaffold_3770184130.1 Alkaloid IO low borderline
Cmedscaffold_3770184150.1 Alkaloid IO low borderline
Cmedscaffold_380185580.1 Alkaloid IO medium borderline
Cmedscaffold_380186510.1 Alkaloid IO medium borderline
Cmedscaffold_3930192650.1 Alkaloid IO medium borderline
Cmedscaffold_500229740.1 Alkaloid IO medium borderline
Cmedscaffold_500229750.1 Alkaloid IO medium borderline
Cmedscaffold_5030230890.1 Alkaloid IO medium borderline
Cmedscaffold_5690246380.1 Alkaloid IO medium borderline
Cmedscaffold_5780249150.1 Alkaloid IO medium borderline
Cmedscaffold_590252150.1 Alkaloid IO low borderline
Cmedscaffold_730284870.1 Alkaloid IO medium borderline
Cmedscaffold_7370286760.1 Alkaloid IO medium borderline
Cmedscaffold_740287580.1 Alkaloid IO medium borderline
Cmedscaffold_7630291550.1 Alkaloid IO medium borderline
Cmedscaffold_7770293950.1 Alkaloid IO medium borderline
Cmedscaffold_820301570.1 Alkaloid IO medium borderline
Cmedscaffold_290141750.1 Alkaloid ISY low borderline
Cmedscaffold_3390166500.1 Alkaloid ISY medium pass
Cmedscaffold_3860189360.1 Alkaloid ISY low borderline
Cmedscaffold_109190011780.1 Alkaloid LAMT medium borderline
Cmedscaffold_110013130.1 Alkaloid LAMT low borderline
Cmedscaffold_1130018080.1 Alkaloid LAMT medium borderline
Cmedscaffold_1130018080.2 Alkaloid LAMT medium borderline
Cmedscaffold_120025650.1 Alkaloid LAMT medium borderline
Cmedscaffold_12740033020.1 Alkaloid LAMT medium borderline
Cmedscaffold_1350039880.1 Alkaloid LAMT medium borderline
Cmedscaffold_14980052830.1 Alkaloid LAMT medium borderline
Cmedscaffold_1930088100.1 Alkaloid LAMT medium borderline
Cmedscaffold_1930088150.1 Alkaloid LAMT medium borderline
Cmedscaffold_1930088160.1 Alkaloid LAMT medium borderline
Cmedscaffold_1930088170.1 Alkaloid LAMT medium borderline
Cmedscaffold_20650097700.1 Alkaloid LAMT medium borderline
Cmedscaffold_20650097710.1 Alkaloid LAMT medium borderline
Cmedscaffold_20650097730.1 Alkaloid LAMT medium borderline
Cmedscaffold_210099510.1 Alkaloid LAMT medium borderline
Cmedscaffold_210099510.2 Alkaloid LAMT medium borderline
Cmedscaffold_23280111700.1 Alkaloid LAMT medium borderline
Cmedscaffold_23280111700.2 Alkaloid LAMT medium borderline
Cmedscaffold_2750135010.1 Alkaloid LAMT low borderline
Cmedscaffold_2890141680.1 Alkaloid LAMT medium borderline
Cmedscaffold_32150159260.1 Alkaloid LAMT medium borderline