Citrus medica (citrus_medica)
Imported from atlas release summary for Citrus medica.
2858
Candidate Protein Records
2210
Pathway-Level Records
5742
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5742
Family-Level Calls
C4H
6.9%
C3'H/CYP98A
6.27%
BAHD
6.13%
CYP76
4.63%
IFS
4.34%
4CL
4.13%
T3O
3.45%
POD
3.36%
Other Families
60.8%
More Families (98)
NMT
185
3.22%
UGT
178
3.1%
F3H
168
2.93%
DWF4/CYP90B1
159
2.77%
CODM/T6ODM
124
2.16%
7DLGT
120
2.09%
F3'H/CYP75B
113
1.97%
BR6OX2/CYP85A2
107
1.86%
CYP71
100
1.74%
UFGT
85
1.48%
TPS
80
1.39%
GES
78
1.36%
CAS
78
1.36%
TRI/TRII
73
1.27%
SMT1/SMT2/SMT3
72
1.25%
IFR
69
1.2%
CYP90D1
64
1.11%
H6H
63
1.1%
G8O/G8H
63
1.1%
STR
60
1.04%
BBE
59
1.03%
T16H
58
1.01%
IO
56
0.98%
COR
50
0.87%
CAD
50
0.87%
RAS
50
0.87%
SGD
49
0.85%
HCT
46
0.8%
PYKS
45
0.78%
F3'5'H/CYP75A
45
0.78%
GS
44
0.77%
CSE
43
0.75%
COMT
41
0.71%
LAMT
38
0.66%
LAC
38
0.66%
F5H/CYP84A
35
0.61%
CPD/CYP90A1
33
0.57%
PMT
31
0.54%
ANR
31
0.54%
7DLH
30
0.52%
NCS
29
0.51%
FNS
29
0.51%
CCR
26
0.45%
SLS
25
0.44%
16OMT
23
0.4%
8HGO
22
0.38%
CYP51G1
22
0.38%
GGPPS
21
0.37%
CHS
20
0.35%
ANS/LDOX
19
0.33%
TAT
19
0.33%
PAL
18
0.31%
SQS/FDFT1
15
0.26%
AACT
15
0.26%
MPO
14
0.24%
6OMT_4OMT_SOMT
13
0.23%
CNMT
12
0.21%
BR6OX1/CYP85A1
12
0.21%
SQE
12
0.21%
MCT/IspD
12
0.21%
DFR
11
0.19%
DXR
11
0.19%
TYDC_DDC
10
0.17%
CCoAOMT
10
0.17%
ROT3/CYP90C1
10
0.17%
FPPS
10
0.17%
CYP719
9
0.16%
HPPR
9
0.16%
CPR
8
0.14%
HMGS
8
0.14%
MVD
8
0.14%
ODC
7
0.12%
FLS
7
0.12%
CHI
7
0.12%
DXS
7
0.12%
CYP80B1
6
0.1%
MVK
6
0.1%
XMT_MXMT_DXMT
5
0.09%
HYD1
5
0.09%
GPPS
5
0.09%
TDC
4
0.07%
SMO1/SMO2
4
0.07%
FK
4
0.07%
CMK/IspE
4
0.07%
ISY
3
0.05%
HDR/IspH
3
0.05%
PMK
3
0.05%
CYP80F1
2
0.03%
DWF7
2
0.03%
DWF1
2
0.03%
DWF5
2
0.03%
CPI1
2
0.03%
HMGR
2
0.03%
HDS/IspG
2
0.03%
ADC
1
0.02%
DET2
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 678 | 20 | BAHD (294) | View species results |
| Alkaloid pathway | 560 | 26 | NMT (112) | View species results |
| Phenylpropanoid pathway | 422 | 12 | POD (178) | View species results |
| Rosmarinic acid pathway | 212 | 7 | C4H (99) | View species results |
| Flavonoid pathway | 189 | 9 | UFGT (68) | View species results |
| Steroid pathway | 149 | 11 | CAS (66) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2418 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 448 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Cmedscaffold_260124670.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_2660129590.1 | Alkaloid | PYKS | high | pass |
| Cmedscaffold_290143150.1 | Alkaloid | PYKS | high | pass |
| Cmedscaffold_30147690.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_3050150560.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_310153150.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_31570155540.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_3200158930.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_3230159860.1 | Alkaloid | PYKS | high | pass |
| Cmedscaffold_34_10170260.1 | Alkaloid | PYKS | high | pass |
| Cmedscaffold_34_20170710.1 | Alkaloid | PYKS | high | pass |
| Cmedscaffold_34_20170740.1 | Alkaloid | PYKS | high | pass |
| Cmedscaffold_43720209820.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_440211060.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_446_10213110.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_4880224910.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_550242300.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_6250260280.1 | Alkaloid | PYKS | high | pass |
| Cmedscaffold_640263380.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_640263400.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_640263800.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_640263810.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_640263820.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_640263840.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_640263880.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_640263900.1 | Alkaloid | PYKS | low | borderline |
| Cmedscaffold_8350304270.1 | Alkaloid | PYKS | high | pass |
| Cmedscaffold_1430047610.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_1690070950.1 | Alkaloid | SGD | low | borderline |
| Cmedscaffold_19090087040.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_2260108010.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_2260108010.2 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_27180132870.1 | Alkaloid | SGD | low | borderline |
| Cmedscaffold_2990146260.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_2990146260.2 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_2990146260.3 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_2990146290.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_3020149590.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_3020149590.2 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_3020149590.3 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_3660179490.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_390190920.1 | Alkaloid | SGD | low | borderline |
| Cmedscaffold_390190920.2 | Alkaloid | SGD | low | borderline |
| Cmedscaffold_390190920.3 | Alkaloid | SGD | low | borderline |
| Cmedscaffold_390190920.4 | Alkaloid | SGD | low | borderline |
| Cmedscaffold_410200200.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_410200210.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_410200230.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_410200250.1 | Alkaloid | SGD | medium | pass |
| Cmedscaffold_410200260.1 | Alkaloid | SGD | medium | pass |