PlantSME Plant secondary metabolism enzyme database

Citrus medica (citrus_medica)

Imported from atlas release summary for Citrus medica.

2210
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 678 20 BAHD (294) View species results
Alkaloid pathway 560 26 NMT (112) View species results
Phenylpropanoid pathway 422 12 POD (178) View species results
Rosmarinic acid pathway 212 7 C4H (99) View species results
Flavonoid pathway 189 9 UFGT (68) View species results
Steroid pathway 149 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2418 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 448 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Cmedscaffold_4230205330.4 Flavonoid ANR medium borderline
Cmedscaffold_4230205330.5 Flavonoid ANR medium borderline
Cmedscaffold_4230205330.7 Flavonoid ANR medium borderline
Cmedscaffold_4340208760.1 Flavonoid ANR medium borderline
Cmedscaffold_4840223960.1 Flavonoid ANR medium borderline
Cmedscaffold_530237900.1 Flavonoid ANR medium borderline
Cmedscaffold_530237910.1 Flavonoid ANR medium borderline
Cmedscaffold_820301430.1 Flavonoid ANR low borderline
Cmedscaffold_820301430.2 Flavonoid ANR low borderline
Cmedscaffold_9690323200.1 Flavonoid ANR low borderline
Cmedscaffold_1190024170.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_1200026740.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_1460050320.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_1460050360.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_1640067430.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_19520089190.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_19560089270.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_19560089280.1 Flavonoid ANS/LDOX medium pass
Cmedscaffold_2210105850.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_260126030.1 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_5310238980.1 Flavonoid ANS/LDOX low borderline
Cmedscaffold_5310238980.2 Flavonoid ANS/LDOX low borderline
Cmedscaffold_5310238980.3 Flavonoid ANS/LDOX low borderline
Cmedscaffold_5310238980.4 Flavonoid ANS/LDOX low borderline
Cmedscaffold_56_10246810.1 Flavonoid ANS/LDOX low borderline
Cmedscaffold_59700254320.1 Flavonoid ANS/LDOX medium pass
Cmedscaffold_900314870.2 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_900314870.3 Flavonoid ANS/LDOX medium borderline
Cmedscaffold_980324060.1 Flavonoid ANS/LDOX medium pass
Cmedscaffold_16470067690.1 Flavonoid C4H medium borderline
Cmedscaffold_240115710.1 Flavonoid C4H low borderline
Cmedscaffold_2560122970.1 Flavonoid C4H medium borderline
Cmedscaffold_2560122970.2 Flavonoid C4H medium borderline
Cmedscaffold_2560123020.1 Flavonoid C4H medium borderline
Cmedscaffold_270131300.1 Flavonoid C4H low borderline
Cmedscaffold_280137650.1 Flavonoid C4H medium borderline
Cmedscaffold_380186170.1 Flavonoid C4H low borderline
Cmedscaffold_48890225300.1 Flavonoid C4H medium borderline
Cmedscaffold_48890225300.2 Flavonoid C4H medium borderline
Cmedscaffold_5880251460.1 Flavonoid C4H low borderline
Cmedscaffold_670269960.1 Flavonoid C4H medium borderline
Cmedscaffold_6820272380.1 Flavonoid C4H medium borderline
Cmedscaffold_1700072570.1 Flavonoid CHI low borderline
Cmedscaffold_2430117650.1 Flavonoid CHI low borderline
Cmedscaffold_370181230.1 Flavonoid CHI medium pass
Cmedscaffold_790296700.1 Flavonoid CHI medium pass
Cmedscaffold_790296700.2 Flavonoid CHI medium pass
Cmedscaffold_940319950.1 Flavonoid CHI low borderline
Cmedscaffold_940319950.2 Flavonoid CHI low borderline
Cmedscaffold_126970032610.1 Flavonoid CHS medium pass