PlantSME Plant secondary metabolism enzyme database

Homaliodendron scalpellifolium (homaliodendron_scalpellifolium)

Imported from atlas release summary for Homaliodendron scalpellifolium.

784
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.91% Terpenoid pathway 23.85% Alkaloid pathway 18.11% Flavonoid pathway 13.39% Rosmarinic acid pathway 11.61% Steroid pathway 6.12%
Family Distribution
C4H 7.04% C3'H/CYP98A 5.68% BAHD 5.39% POD 5.0% 4CL 4.8% CYP76 4.61% PAL 3.78% NMT 3.4%
Other Families 60.31%
More Families (97)
IFS 67 3.25% DWF4/CYP90B1 55 2.67% F3'H/CYP75B 47 2.28% BR6OX2/CYP85A2 47 2.28% T3O 44 2.13% F3H 44 2.13% STR 43 2.09% IFR 41 1.99% UGT 38 1.84% 7DLGT 33 1.6% GS 33 1.6% PYKS 30 1.46% UFGT 30 1.46% CAD 30 1.46% COMT 28 1.36% IO 27 1.31% CODM/T6ODM 26 1.26% G8O/G8H 21 1.02% TRI/TRII 21 1.02% CHS 20 0.97% SMT1/SMT2/SMT3 20 0.97% CYP71 19 0.92% 7DLH 18 0.87% H6H 18 0.87% CAS 18 0.87% F3'5'H/CYP75A 17 0.82% CYP90D1 17 0.82% LAMT 16 0.78% SLS 16 0.78% 16OMT 16 0.78% CSE 16 0.78% T16H 15 0.73% NCS 13 0.63% FNS 13 0.63% ANR 13 0.63% SGD 11 0.53% HCT 11 0.53% RAS 11 0.53% BBE 10 0.49% CYP80B1 10 0.49% 8HGO 9 0.44% CNMT 9 0.44% LAC 9 0.44% SQS/FDFT1 9 0.44% COR 8 0.39% GES 8 0.39% DWF5 8 0.39% AACT 8 0.39% TPS 8 0.39% GGPPS 7 0.34% PMT 6 0.29% TDC 6 0.29% CPD/CYP90A1 6 0.29% MPO 5 0.24% CHI 5 0.24% DFR 5 0.24% CCR 5 0.24% TAT 5 0.24% ROT3/CYP90C1 5 0.24% TYDC_DDC 4 0.19% CYP719 4 0.19% F5H/CYP84A 4 0.19% CPR 4 0.19% BR6OX1/CYP85A1 4 0.19% MVK 4 0.19% DXS 4 0.19% HDR/IspH 4 0.19% 6OMT_4OMT_SOMT 3 0.15% ISY 3 0.15% CYP80F1 3 0.15% FLS 3 0.15% SMO1/SMO2 3 0.15% CYP51G1 3 0.15% SQE 3 0.15% IDI 3 0.15% HDS/IspG 3 0.15% MVD 3 0.15% ADC 2 0.1% FK 2 0.1% DET2 2 0.1% CMK/IspE 2 0.1% DXR 2 0.1% MCT/IspD 2 0.1% FPPS 2 0.1% XMT_MXMT_DXMT 1 0.05% ODC 1 0.05% ANS/LDOX 1 0.05% CCoAOMT 1 0.05% HPPR 1 0.05% HYD1 1 0.05% CPI1 1 0.05% DWF7 1 0.05% DWF1 1 0.05% MDS/IspF 1 0.05% HMGS 1 0.05% HMGR 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 211 11 POD (97) View species results
Terpenoid pathway 187 19 BAHD (73) View species results
Alkaloid pathway 142 20 NMT (33) View species results
Flavonoid pathway 105 10 UFGT (27) View species results
Rosmarinic acid pathway 91 7 C4H (33) View species results
Steroid pathway 48 12 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 806 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 133 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
Hsca1649840155680 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
Hsca1650440158460 Terpenoid BAHD medium pass BAHD__00014__sp_B9RK42_GPC1_RICCO
Hsca1651080160700 Terpenoid BAHD low borderline BAHD__00038__sp_Q3EC11_ZDHC2_ARATH
Hsca1651580161930 Terpenoid BAHD low borderline BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Hsca1654410171810 Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
Hsca1655770177540 Terpenoid BAHD low borderline BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Hsca1655780177600 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Hsca1655850177950 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Hsca1656230179160 Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Hsca1658320187130 Terpenoid BAHD medium pass BAHD__00023__sp_O22975_LPAAT_ARATH
Hsca1658460187880 Terpenoid BAHD low borderline BAHD__00018__sp_I1MRZ6_DAT32_SOYBN
Hsca1658720190070 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Hsca1658720190080 Terpenoid BAHD low borderline BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
Hsca1659240192170 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Hsca1660330197190 Terpenoid BAHD low borderline BAHD__00092__sp_Q9SU91_LPXA_ARATH
Hsca1660960200720 Terpenoid BAHD low borderline BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
Hsca1661400202480 Terpenoid BAHD low borderline BAHD__00043__sp_Q52T38_ZDH22_ARATH
Hsca1661660203820 Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
Hsca1661920205020 Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
Hsca1662990209840 Terpenoid BAHD medium pass BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
Hsca1663440211950 Terpenoid BAHD low borderline BAHD__00097__sp_Q9ZV87_NAPES_ARATH
Hsca1663760213290 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Hsca1665430222080 Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Hsca1665510222310 Terpenoid BAHD medium pass BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Hsca1665730223640 Terpenoid BAHD medium pass BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
Hsca1665760223900 Terpenoid BAHD medium pass BAHD__00040__sp_Q41745_LPAT_MAIZE
Hsca1666580227530 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Hsca1666990229310 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Hsca1667150229940 Terpenoid BAHD low borderline BAHD__00042__sp_Q500Z2_ZDH20_ARATH
Hsca1681630234130 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Hsca1681640234140 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Hsca1868890243300 Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Hsca1868900243340 Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Hsca1890244830 Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
Hsca1960710251380 Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
Hsca1960720251440 Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
Hsca1966730253620 Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
Hsca1966740253650 Terpenoid BAHD low borderline BAHD__00050__sp_Q6DR03_ZDHC3_ARATH
Hsca1966740253660 Terpenoid BAHD medium pass BAHD__00068__sp_Q9C533_ZDHC1_ARATH
Hsca1968520254270 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
Hsca1968530254290 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
Hsca2010255000 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Hsca2040255600 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Hsca2250258330 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Hsca2400260510 Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Hsca2460261690 Terpenoid BAHD low borderline BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
Hsca2610263500 Terpenoid BAHD medium pass BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
Hsca2720264700 Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Hsca2740265030 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
Hsca3220271250 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC