PlantSME Plant secondary metabolism enzyme database

Homaliodendron scalpellifolium (homaliodendron_scalpellifolium)

Imported from atlas release summary for Homaliodendron scalpellifolium.

784
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.91% Terpenoid pathway 23.85% Alkaloid pathway 18.11% Flavonoid pathway 13.39% Rosmarinic acid pathway 11.61% Steroid pathway 6.12%
Family Distribution
C4H 7.04% C3'H/CYP98A 5.68% BAHD 5.39% POD 5.0% 4CL 4.8% CYP76 4.61% PAL 3.78% NMT 3.4%
Other Families 60.31%
More Families (97)
IFS 67 3.25% DWF4/CYP90B1 55 2.67% F3'H/CYP75B 47 2.28% BR6OX2/CYP85A2 47 2.28% T3O 44 2.13% F3H 44 2.13% STR 43 2.09% IFR 41 1.99% UGT 38 1.84% 7DLGT 33 1.6% GS 33 1.6% PYKS 30 1.46% UFGT 30 1.46% CAD 30 1.46% COMT 28 1.36% IO 27 1.31% CODM/T6ODM 26 1.26% G8O/G8H 21 1.02% TRI/TRII 21 1.02% CHS 20 0.97% SMT1/SMT2/SMT3 20 0.97% CYP71 19 0.92% 7DLH 18 0.87% H6H 18 0.87% CAS 18 0.87% F3'5'H/CYP75A 17 0.82% CYP90D1 17 0.82% LAMT 16 0.78% SLS 16 0.78% 16OMT 16 0.78% CSE 16 0.78% T16H 15 0.73% NCS 13 0.63% FNS 13 0.63% ANR 13 0.63% SGD 11 0.53% HCT 11 0.53% RAS 11 0.53% BBE 10 0.49% CYP80B1 10 0.49% 8HGO 9 0.44% CNMT 9 0.44% LAC 9 0.44% SQS/FDFT1 9 0.44% COR 8 0.39% GES 8 0.39% DWF5 8 0.39% AACT 8 0.39% TPS 8 0.39% GGPPS 7 0.34% PMT 6 0.29% TDC 6 0.29% CPD/CYP90A1 6 0.29% MPO 5 0.24% CHI 5 0.24% DFR 5 0.24% CCR 5 0.24% TAT 5 0.24% ROT3/CYP90C1 5 0.24% TYDC_DDC 4 0.19% CYP719 4 0.19% F5H/CYP84A 4 0.19% CPR 4 0.19% BR6OX1/CYP85A1 4 0.19% MVK 4 0.19% DXS 4 0.19% HDR/IspH 4 0.19% 6OMT_4OMT_SOMT 3 0.15% ISY 3 0.15% CYP80F1 3 0.15% FLS 3 0.15% SMO1/SMO2 3 0.15% CYP51G1 3 0.15% SQE 3 0.15% IDI 3 0.15% HDS/IspG 3 0.15% MVD 3 0.15% ADC 2 0.1% FK 2 0.1% DET2 2 0.1% CMK/IspE 2 0.1% DXR 2 0.1% MCT/IspD 2 0.1% FPPS 2 0.1% XMT_MXMT_DXMT 1 0.05% ODC 1 0.05% ANS/LDOX 1 0.05% CCoAOMT 1 0.05% HPPR 1 0.05% HYD1 1 0.05% CPI1 1 0.05% DWF7 1 0.05% DWF1 1 0.05% MDS/IspF 1 0.05% HMGS 1 0.05% HMGR 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 211 11 POD (97) View species results
Terpenoid pathway 187 19 BAHD (73) View species results
Alkaloid pathway 142 20 NMT (33) View species results
Flavonoid pathway 105 10 UFGT (27) View species results
Rosmarinic acid pathway 91 7 C4H (33) View species results
Steroid pathway 48 12 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 806 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 133 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
Hsca1390480028850 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hsca1479150040530 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hsca1488940045690 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hsca1600670076260 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hsca1600670076280 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hsca1615040086780 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hsca1620410093130 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hsca1620720093790 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
Hsca1632750112750 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hsca2020255020 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hsca4290285600 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hsca4330286720 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
Hsca700292120 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA