PlantSME Plant secondary metabolism enzyme database

Homaliodendron scalpellifolium (homaliodendron_scalpellifolium)

Imported from atlas release summary for Homaliodendron scalpellifolium.

784
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.91% Terpenoid pathway 23.85% Alkaloid pathway 18.11% Flavonoid pathway 13.39% Rosmarinic acid pathway 11.61% Steroid pathway 6.12%
Family Distribution
C4H 7.04% C3'H/CYP98A 5.68% BAHD 5.39% POD 5.0% 4CL 4.8% CYP76 4.61% PAL 3.78% NMT 3.4%
Other Families 60.31%
More Families (97)
IFS 67 3.25% DWF4/CYP90B1 55 2.67% F3'H/CYP75B 47 2.28% BR6OX2/CYP85A2 47 2.28% T3O 44 2.13% F3H 44 2.13% STR 43 2.09% IFR 41 1.99% UGT 38 1.84% 7DLGT 33 1.6% GS 33 1.6% PYKS 30 1.46% UFGT 30 1.46% CAD 30 1.46% COMT 28 1.36% IO 27 1.31% CODM/T6ODM 26 1.26% G8O/G8H 21 1.02% TRI/TRII 21 1.02% CHS 20 0.97% SMT1/SMT2/SMT3 20 0.97% CYP71 19 0.92% 7DLH 18 0.87% H6H 18 0.87% CAS 18 0.87% F3'5'H/CYP75A 17 0.82% CYP90D1 17 0.82% LAMT 16 0.78% SLS 16 0.78% 16OMT 16 0.78% CSE 16 0.78% T16H 15 0.73% NCS 13 0.63% FNS 13 0.63% ANR 13 0.63% SGD 11 0.53% HCT 11 0.53% RAS 11 0.53% BBE 10 0.49% CYP80B1 10 0.49% 8HGO 9 0.44% CNMT 9 0.44% LAC 9 0.44% SQS/FDFT1 9 0.44% COR 8 0.39% GES 8 0.39% DWF5 8 0.39% AACT 8 0.39% TPS 8 0.39% GGPPS 7 0.34% PMT 6 0.29% TDC 6 0.29% CPD/CYP90A1 6 0.29% MPO 5 0.24% CHI 5 0.24% DFR 5 0.24% CCR 5 0.24% TAT 5 0.24% ROT3/CYP90C1 5 0.24% TYDC_DDC 4 0.19% CYP719 4 0.19% F5H/CYP84A 4 0.19% CPR 4 0.19% BR6OX1/CYP85A1 4 0.19% MVK 4 0.19% DXS 4 0.19% HDR/IspH 4 0.19% 6OMT_4OMT_SOMT 3 0.15% ISY 3 0.15% CYP80F1 3 0.15% FLS 3 0.15% SMO1/SMO2 3 0.15% CYP51G1 3 0.15% SQE 3 0.15% IDI 3 0.15% HDS/IspG 3 0.15% MVD 3 0.15% ADC 2 0.1% FK 2 0.1% DET2 2 0.1% CMK/IspE 2 0.1% DXR 2 0.1% MCT/IspD 2 0.1% FPPS 2 0.1% XMT_MXMT_DXMT 1 0.05% ODC 1 0.05% ANS/LDOX 1 0.05% CCoAOMT 1 0.05% HPPR 1 0.05% HYD1 1 0.05% CPI1 1 0.05% DWF7 1 0.05% DWF1 1 0.05% MDS/IspF 1 0.05% HMGS 1 0.05% HMGR 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 211 11 POD (97) View species results
Terpenoid pathway 187 19 BAHD (73) View species results
Alkaloid pathway 142 20 NMT (33) View species results
Flavonoid pathway 105 10 UFGT (27) View species results
Rosmarinic acid pathway 91 7 C4H (33) View species results
Steroid pathway 48 12 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 806 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 133 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Hsca1007480000520 Flavonoid IFS low borderline
Hsca1144480008410 Flavonoid IFS medium borderline
Hsca1190011440 Flavonoid IFS medium borderline
Hsca1288270019330 Flavonoid IFS low borderline
Hsca1351060022890 Flavonoid IFS medium borderline
Hsca1352320023140 Flavonoid IFS low borderline
Hsca1352890023180 Flavonoid IFS medium borderline
Hsca1437160032330 Flavonoid IFS low borderline
Hsca1441650033050 Flavonoid IFS low borderline
Hsca1537190051930 Flavonoid IFS low borderline
Hsca1539840052290 Flavonoid IFS medium borderline
Hsca1540610052580 Flavonoid IFS low borderline
Hsca1558580059300 Flavonoid IFS low borderline
Hsca1582310067110 Flavonoid IFS low borderline
Hsca1597360074500 Flavonoid IFS medium borderline
Hsca1598540074980 Flavonoid IFS low borderline
Hsca1604540078920 Flavonoid IFS low borderline
Hsca1607980081160 Flavonoid IFS low borderline
Hsca1608180081340 Flavonoid IFS medium borderline
Hsca1610040082510 Flavonoid IFS medium borderline
Hsca1612280084910 Flavonoid IFS low borderline
Hsca1616660088800 Flavonoid IFS low borderline
Hsca1627440102060 Flavonoid IFS low borderline
Hsca1628230103800 Flavonoid IFS medium borderline
Hsca1632660112550 Flavonoid IFS low borderline
Hsca1633570114160 Flavonoid IFS medium borderline
Hsca1634070115130 Flavonoid IFS low borderline
Hsca1634860117200 Flavonoid IFS low borderline
Hsca1636820120780 Flavonoid IFS low borderline
Hsca1636840120830 Flavonoid IFS medium borderline
Hsca1636850120850 Flavonoid IFS medium borderline
Hsca1641110130180 Flavonoid IFS medium borderline
Hsca1644320139380 Flavonoid IFS low borderline
Hsca1644470139690 Flavonoid IFS medium borderline
Hsca1645690142610 Flavonoid IFS medium borderline
Hsca1646550145510 Flavonoid IFS medium borderline
Hsca1647260147770 Flavonoid IFS medium borderline
Hsca1648190150580 Flavonoid IFS low borderline
Hsca1649000153040 Flavonoid IFS low borderline
Hsca1649450154450 Flavonoid IFS low borderline
Hsca1651600162140 Flavonoid IFS medium borderline
Hsca1651600162320 Flavonoid IFS medium borderline
Hsca1653260167720 Flavonoid IFS low borderline
Hsca1655050174480 Flavonoid IFS medium borderline
Hsca1655330175280 Flavonoid IFS medium borderline
Hsca1656010178530 Flavonoid IFS medium borderline
Hsca1656640180890 Flavonoid IFS medium borderline
Hsca1657780185030 Flavonoid IFS medium borderline
Hsca1657940185770 Flavonoid IFS low borderline
Hsca1658400187330 Flavonoid IFS medium borderline