PlantSME Plant secondary metabolism enzyme database

Homaliodendron scalpellifolium (homaliodendron_scalpellifolium)

Imported from atlas release summary for Homaliodendron scalpellifolium.

784
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 26.91% Terpenoid pathway 23.85% Alkaloid pathway 18.11% Flavonoid pathway 13.39% Rosmarinic acid pathway 11.61% Steroid pathway 6.12%
Family Distribution
C4H 7.04% C3'H/CYP98A 5.68% BAHD 5.39% POD 5.0% 4CL 4.8% CYP76 4.61% PAL 3.78% NMT 3.4%
Other Families 60.31%
More Families (97)
IFS 67 3.25% DWF4/CYP90B1 55 2.67% F3'H/CYP75B 47 2.28% BR6OX2/CYP85A2 47 2.28% T3O 44 2.13% F3H 44 2.13% STR 43 2.09% IFR 41 1.99% UGT 38 1.84% 7DLGT 33 1.6% GS 33 1.6% PYKS 30 1.46% UFGT 30 1.46% CAD 30 1.46% COMT 28 1.36% IO 27 1.31% CODM/T6ODM 26 1.26% G8O/G8H 21 1.02% TRI/TRII 21 1.02% CHS 20 0.97% SMT1/SMT2/SMT3 20 0.97% CYP71 19 0.92% 7DLH 18 0.87% H6H 18 0.87% CAS 18 0.87% F3'5'H/CYP75A 17 0.82% CYP90D1 17 0.82% LAMT 16 0.78% SLS 16 0.78% 16OMT 16 0.78% CSE 16 0.78% T16H 15 0.73% NCS 13 0.63% FNS 13 0.63% ANR 13 0.63% SGD 11 0.53% HCT 11 0.53% RAS 11 0.53% BBE 10 0.49% CYP80B1 10 0.49% 8HGO 9 0.44% CNMT 9 0.44% LAC 9 0.44% SQS/FDFT1 9 0.44% COR 8 0.39% GES 8 0.39% DWF5 8 0.39% AACT 8 0.39% TPS 8 0.39% GGPPS 7 0.34% PMT 6 0.29% TDC 6 0.29% CPD/CYP90A1 6 0.29% MPO 5 0.24% CHI 5 0.24% DFR 5 0.24% CCR 5 0.24% TAT 5 0.24% ROT3/CYP90C1 5 0.24% TYDC_DDC 4 0.19% CYP719 4 0.19% F5H/CYP84A 4 0.19% CPR 4 0.19% BR6OX1/CYP85A1 4 0.19% MVK 4 0.19% DXS 4 0.19% HDR/IspH 4 0.19% 6OMT_4OMT_SOMT 3 0.15% ISY 3 0.15% CYP80F1 3 0.15% FLS 3 0.15% SMO1/SMO2 3 0.15% CYP51G1 3 0.15% SQE 3 0.15% IDI 3 0.15% HDS/IspG 3 0.15% MVD 3 0.15% ADC 2 0.1% FK 2 0.1% DET2 2 0.1% CMK/IspE 2 0.1% DXR 2 0.1% MCT/IspD 2 0.1% FPPS 2 0.1% XMT_MXMT_DXMT 1 0.05% ODC 1 0.05% ANS/LDOX 1 0.05% CCoAOMT 1 0.05% HPPR 1 0.05% HYD1 1 0.05% CPI1 1 0.05% DWF7 1 0.05% DWF1 1 0.05% MDS/IspF 1 0.05% HMGS 1 0.05% HMGR 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 211 11 POD (97) View species results
Terpenoid pathway 187 19 BAHD (73) View species results
Alkaloid pathway 142 20 NMT (33) View species results
Flavonoid pathway 105 10 UFGT (27) View species results
Rosmarinic acid pathway 91 7 C4H (33) View species results
Steroid pathway 48 12 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 806 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 133 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Hsca1134440006230 Alkaloid PYKS medium pass
Hsca1282980018830 Alkaloid PYKS high pass
Hsca1351310022920 Alkaloid PYKS medium pass
Hsca1401160030550 Alkaloid PYKS high pass
Hsca1550420056610 Alkaloid PYKS high pass
Hsca1562850061900 Alkaloid PYKS medium pass
Hsca1577540065100 Alkaloid PYKS high pass
Hsca1578180065410 Alkaloid PYKS low borderline
Hsca1592640072900 Alkaloid PYKS low borderline
Hsca1599510075440 Alkaloid PYKS medium pass
Hsca1624630098550 Alkaloid PYKS high pass
Hsca1626730101200 Alkaloid PYKS high pass
Hsca1629360105920 Alkaloid PYKS high pass
Hsca1630220107940 Alkaloid PYKS medium pass
Hsca1636930121010 Alkaloid PYKS low borderline
Hsca1637810123340 Alkaloid PYKS low borderline
Hsca1638400125110 Alkaloid PYKS high pass
Hsca1647280147810 Alkaloid PYKS low borderline
Hsca1648260150770 Alkaloid PYKS low borderline
Hsca1650150156930 Alkaloid PYKS low borderline
Hsca1652130164280 Alkaloid PYKS high pass
Hsca1661570203400 Alkaloid PYKS low borderline
Hsca1662160205590 Alkaloid PYKS high pass
Hsca1662180205800 Alkaloid PYKS medium pass
Hsca1664940219370 Alkaloid PYKS high pass
Hsca1961760251930 Alkaloid PYKS low borderline
Hsca1961790251970 Alkaloid PYKS low borderline
Hsca2600263390 Alkaloid PYKS medium pass
Hsca470289240 Alkaloid PYKS low borderline
Hsca620291060 Alkaloid PYKS low borderline