Homaliodendron scalpellifolium (homaliodendron_scalpellifolium)
Imported from atlas release summary for Homaliodendron scalpellifolium.
784
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
784
Candidate Genes
C4H
7.04%
C3'H/CYP98A
5.68%
BAHD
5.39%
POD
5.0%
4CL
4.8%
CYP76
4.61%
PAL
3.78%
NMT
3.4%
Other Families
60.31%
More Families (97)
IFS
67
3.25%
DWF4/CYP90B1
55
2.67%
F3'H/CYP75B
47
2.28%
BR6OX2/CYP85A2
47
2.28%
T3O
44
2.13%
F3H
44
2.13%
STR
43
2.09%
IFR
41
1.99%
UGT
38
1.84%
7DLGT
33
1.6%
GS
33
1.6%
PYKS
30
1.46%
UFGT
30
1.46%
CAD
30
1.46%
COMT
28
1.36%
IO
27
1.31%
CODM/T6ODM
26
1.26%
G8O/G8H
21
1.02%
TRI/TRII
21
1.02%
CHS
20
0.97%
SMT1/SMT2/SMT3
20
0.97%
CYP71
19
0.92%
7DLH
18
0.87%
H6H
18
0.87%
CAS
18
0.87%
F3'5'H/CYP75A
17
0.82%
CYP90D1
17
0.82%
LAMT
16
0.78%
SLS
16
0.78%
16OMT
16
0.78%
CSE
16
0.78%
T16H
15
0.73%
NCS
13
0.63%
FNS
13
0.63%
ANR
13
0.63%
SGD
11
0.53%
HCT
11
0.53%
RAS
11
0.53%
BBE
10
0.49%
CYP80B1
10
0.49%
8HGO
9
0.44%
CNMT
9
0.44%
LAC
9
0.44%
SQS/FDFT1
9
0.44%
COR
8
0.39%
GES
8
0.39%
DWF5
8
0.39%
AACT
8
0.39%
TPS
8
0.39%
GGPPS
7
0.34%
PMT
6
0.29%
TDC
6
0.29%
CPD/CYP90A1
6
0.29%
MPO
5
0.24%
CHI
5
0.24%
DFR
5
0.24%
CCR
5
0.24%
TAT
5
0.24%
ROT3/CYP90C1
5
0.24%
TYDC_DDC
4
0.19%
CYP719
4
0.19%
F5H/CYP84A
4
0.19%
CPR
4
0.19%
BR6OX1/CYP85A1
4
0.19%
MVK
4
0.19%
DXS
4
0.19%
HDR/IspH
4
0.19%
6OMT_4OMT_SOMT
3
0.15%
ISY
3
0.15%
CYP80F1
3
0.15%
FLS
3
0.15%
SMO1/SMO2
3
0.15%
CYP51G1
3
0.15%
SQE
3
0.15%
IDI
3
0.15%
HDS/IspG
3
0.15%
MVD
3
0.15%
ADC
2
0.1%
FK
2
0.1%
DET2
2
0.1%
CMK/IspE
2
0.1%
DXR
2
0.1%
MCT/IspD
2
0.1%
FPPS
2
0.1%
XMT_MXMT_DXMT
1
0.05%
ODC
1
0.05%
ANS/LDOX
1
0.05%
CCoAOMT
1
0.05%
HPPR
1
0.05%
HYD1
1
0.05%
CPI1
1
0.05%
DWF7
1
0.05%
DWF1
1
0.05%
MDS/IspF
1
0.05%
HMGS
1
0.05%
HMGR
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 211 | 11 | POD (97) | View species results |
| Terpenoid pathway | 187 | 19 | BAHD (73) | View species results |
| Alkaloid pathway | 142 | 20 | NMT (33) | View species results |
| Flavonoid pathway | 105 | 10 | UFGT (27) | View species results |
| Rosmarinic acid pathway | 91 | 7 | C4H (33) | View species results |
| Steroid pathway | 48 | 12 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 806 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 133 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Hsca1160009710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1441980033120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1553240056970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1555830057740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1562970061970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1591770072110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1600060075700 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1602120076880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1611010083630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1616960089300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1620800093950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1635310118290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1637060121270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1641220130780 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1642630135240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1642760135610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1643430137440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1644190138970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1649010153060 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hsca1653230167700 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1655870178080 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1659570194190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1659630194520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1659680194720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1659680194790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1659680194820 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1661180201770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1663080210240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1665350221550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1665430222050 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1665730223680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1666210225620 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hsca1730236810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca1946740245970 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hsca1946750246040 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hsca2200257740 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hsca2290259040 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca2300259240 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Hsca2640263730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca2700264420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca2700264430 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca2720264760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Hsca4500288580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |