Homaliodendron scalpellifolium (homaliodendron_scalpellifolium)
Imported from atlas release summary for Homaliodendron scalpellifolium.
784
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
784
Candidate Genes
C4H
7.04%
C3'H/CYP98A
5.68%
BAHD
5.39%
POD
5.0%
4CL
4.8%
CYP76
4.61%
PAL
3.78%
NMT
3.4%
Other Families
60.31%
More Families (97)
IFS
67
3.25%
DWF4/CYP90B1
55
2.67%
F3'H/CYP75B
47
2.28%
BR6OX2/CYP85A2
47
2.28%
T3O
44
2.13%
F3H
44
2.13%
STR
43
2.09%
IFR
41
1.99%
UGT
38
1.84%
7DLGT
33
1.6%
GS
33
1.6%
PYKS
30
1.46%
UFGT
30
1.46%
CAD
30
1.46%
COMT
28
1.36%
IO
27
1.31%
CODM/T6ODM
26
1.26%
G8O/G8H
21
1.02%
TRI/TRII
21
1.02%
CHS
20
0.97%
SMT1/SMT2/SMT3
20
0.97%
CYP71
19
0.92%
7DLH
18
0.87%
H6H
18
0.87%
CAS
18
0.87%
F3'5'H/CYP75A
17
0.82%
CYP90D1
17
0.82%
LAMT
16
0.78%
SLS
16
0.78%
16OMT
16
0.78%
CSE
16
0.78%
T16H
15
0.73%
NCS
13
0.63%
FNS
13
0.63%
ANR
13
0.63%
SGD
11
0.53%
HCT
11
0.53%
RAS
11
0.53%
BBE
10
0.49%
CYP80B1
10
0.49%
8HGO
9
0.44%
CNMT
9
0.44%
LAC
9
0.44%
SQS/FDFT1
9
0.44%
COR
8
0.39%
GES
8
0.39%
DWF5
8
0.39%
AACT
8
0.39%
TPS
8
0.39%
GGPPS
7
0.34%
PMT
6
0.29%
TDC
6
0.29%
CPD/CYP90A1
6
0.29%
MPO
5
0.24%
CHI
5
0.24%
DFR
5
0.24%
CCR
5
0.24%
TAT
5
0.24%
ROT3/CYP90C1
5
0.24%
TYDC_DDC
4
0.19%
CYP719
4
0.19%
F5H/CYP84A
4
0.19%
CPR
4
0.19%
BR6OX1/CYP85A1
4
0.19%
MVK
4
0.19%
DXS
4
0.19%
HDR/IspH
4
0.19%
6OMT_4OMT_SOMT
3
0.15%
ISY
3
0.15%
CYP80F1
3
0.15%
FLS
3
0.15%
SMO1/SMO2
3
0.15%
CYP51G1
3
0.15%
SQE
3
0.15%
IDI
3
0.15%
HDS/IspG
3
0.15%
MVD
3
0.15%
ADC
2
0.1%
FK
2
0.1%
DET2
2
0.1%
CMK/IspE
2
0.1%
DXR
2
0.1%
MCT/IspD
2
0.1%
FPPS
2
0.1%
XMT_MXMT_DXMT
1
0.05%
ODC
1
0.05%
ANS/LDOX
1
0.05%
CCoAOMT
1
0.05%
HPPR
1
0.05%
HYD1
1
0.05%
CPI1
1
0.05%
DWF7
1
0.05%
DWF1
1
0.05%
MDS/IspF
1
0.05%
HMGS
1
0.05%
HMGR
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 211 | 11 | POD (97) | View species results |
| Terpenoid pathway | 187 | 19 | BAHD (73) | View species results |
| Alkaloid pathway | 142 | 20 | NMT (33) | View species results |
| Flavonoid pathway | 105 | 10 | UFGT (27) | View species results |
| Rosmarinic acid pathway | 91 | 7 | C4H (33) | View species results |
| Steroid pathway | 48 | 12 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 806 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 133 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Hsca1489070045810 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1539840052290 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1552880056820 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1558580059300 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1559980060080 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1582310067110 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1588330069700 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1590480071100 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1593170073720 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1597360074500 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1599360075380 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1604540078920 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1608180081340 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1608740081620 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1610040082510 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1610530083040 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1610530083050 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1612280084910 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1613880085780 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1614580086160 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1614580086170 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1616660088810 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1620430093300 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1628130103570 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1628230103800 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1633570114160 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1634860117200 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1635130117830 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1635420118550 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1636820120780 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1636840120830 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1636850120850 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1636910120890 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1640470128870 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1640720129540 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1641110130180 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1641130130240 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1641130130260 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1642390134760 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1644320139380 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1644470139690 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1645690142610 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1646550145510 | Rosmarinic Acid | C4H | medium | pass |
| Hsca1646550145530 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1647260147770 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1648190150580 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1649000153040 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1649280153940 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1651600162140 | Rosmarinic Acid | C4H | low | borderline |
| Hsca1651600162320 | Rosmarinic Acid | C4H | low | borderline |