PlantSME Plant secondary metabolism enzyme database

Lonicera japonica (lonicera_japonica)

Imported from atlas release summary for Lonicera japonica.

2547
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 34.47% Alkaloid pathway 24.54% Phenylpropanoid pathway 16.57% Flavonoid pathway 14.8% Steroid pathway 5.42% Rosmarinic acid pathway 4.2%
Family Distribution
UGT 6.91% C4H 6.65% 7DLGT 5.94% UFGT 5.69% C3'H/CYP98A 5.53% BAHD 4.84% CYP76 3.68% IFS 3.51%
Other Families 57.25%
More Families (97)
F3H 162 2.8% POD 162 2.8% T3O 138 2.38% F3'H/CYP75B 126 2.18% 4CL 120 2.07% NMT 100 1.73% CODM/T6ODM 96 1.66% STR 93 1.61% DWF4/CYP90B1 93 1.61% CAS 92 1.59% CAD 90 1.56% TPS 89 1.54% BR6OX2/CYP85A2 87 1.5% H6H 82 1.42% GES 81 1.4% G8O/G8H 79 1.37% BBE 77 1.33% 7DLH 73 1.26% IO 63 1.09% SMT1/SMT2/SMT3 63 1.09% LAC 62 1.07% CSE 55 0.95% TRI/TRII 53 0.92% GS 53 0.92% SLS 53 0.92% FNS 48 0.83% IFR 46 0.79% F3'5'H/CYP75A 46 0.79% CYP71 45 0.78% HCT 44 0.76% T16H 42 0.73% CYP90D1 41 0.71% NCS 35 0.6% CPD/CYP90A1 35 0.6% PYKS 33 0.57% RAS 32 0.55% BR6OX1/CYP85A1 32 0.55% COMT 31 0.54% ANR 30 0.52% SGD 28 0.48% F5H/CYP84A 28 0.48% TAT 28 0.48% ANS/LDOX 27 0.47% CCR 27 0.47% PMT 25 0.43% COR 19 0.33% DFR 19 0.33% 8HGO 18 0.31% DXS 17 0.29% 16OMT 16 0.28% PAL 15 0.26% ROT3/CYP90C1 15 0.26% MVK 15 0.26% LAMT 13 0.22% GGPPS 13 0.22% MPO 12 0.21% CYP80B1 12 0.21% CYP51G1 12 0.21% CYP719 11 0.19% ISY 10 0.17% SQE 10 0.17% FPPS 10 0.17% CCoAOMT 9 0.16% CPR 9 0.16% SQS/FDFT1 9 0.16% CHS 8 0.14% HPPR 8 0.14% CYP80F1 7 0.12% XMT_MXMT_DXMT 6 0.1% AACT 6 0.1% MCT/IspD 6 0.1% TYDC_DDC 5 0.09% CNMT 5 0.09% DET2 5 0.09% HMGS 5 0.09% HMGR 5 0.09% SMO1/SMO2 4 0.07% MVD 4 0.07% CHI 3 0.05% FLS 3 0.05% IDI 3 0.05% 6OMT_4OMT_SOMT 2 0.03% TDC 2 0.03% HDS/IspG 2 0.03% DXR 2 0.03% PMK 2 0.03% ODC 1 0.02% ADC 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF7 1 0.02% DWF5 1 0.02% DWF1 1 0.02% CPI1 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 878 20 UGT (373) View species results
Alkaloid pathway 625 24 7DLGT (175) View species results
Phenylpropanoid pathway 422 13 POD (148) View species results
Flavonoid pathway 377 15 UFGT (279) View species results
Steroid pathway 138 13 CAS (71) View species results
Rosmarinic acid pathway 107 7 C4H (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2159 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 356 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF7
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Gene Pathway Family Confidence Status Best Target
LONjap02G0024160.1 Steroid DWF7 medium pass DWF7__00001__sp_Q39208_SC5D1_ARATH