PlantSME Plant secondary metabolism enzyme database

Lonicera japonica (lonicera_japonica)

Imported from atlas release summary for Lonicera japonica.

2547
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 878 20 UGT (373) View species results
Alkaloid pathway 625 24 7DLGT (175) View species results
Phenylpropanoid pathway 422 13 POD (148) View species results
Flavonoid pathway 377 15 UFGT (279) View species results
Steroid pathway 138 13 CAS (71) View species results
Rosmarinic acid pathway 107 7 C4H (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2159 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 356 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
LONjap01G0009850.1 Rosmarinic Acid 4CL medium pass
LONjap01G0035440.1 Rosmarinic Acid 4CL medium pass
LONjap01G0043150.1 Rosmarinic Acid 4CL low borderline
LONjap02G0009980.1 Rosmarinic Acid 4CL low borderline
LONjap02G0018820.1 Rosmarinic Acid 4CL low borderline
LONjap02G0026750.1 Rosmarinic Acid 4CL medium pass
LONjap02G0026780.1 Rosmarinic Acid 4CL medium pass
LONjap02G0027560.1 Rosmarinic Acid 4CL medium pass
LONjap02G0027610.1 Rosmarinic Acid 4CL medium pass
LONjap02G0050110.1 Rosmarinic Acid 4CL low borderline
LONjap03G0004810.1 Rosmarinic Acid 4CL low borderline
LONjap03G0007040.1 Rosmarinic Acid 4CL low borderline
LONjap03G0007290.1 Rosmarinic Acid 4CL medium pass
LONjap03G0007490.1 Rosmarinic Acid 4CL medium pass
LONjap03G0016180.1 Rosmarinic Acid 4CL low borderline
LONjap03G0020580.1 Rosmarinic Acid 4CL medium pass
LONjap03G0026860.1 Rosmarinic Acid 4CL medium pass
LONjap04G0000460.1 Rosmarinic Acid 4CL medium pass
LONjap04G0000590.1 Rosmarinic Acid 4CL medium pass
LONjap04G0013070.1 Rosmarinic Acid 4CL medium pass
LONjap04G0013090.1 Rosmarinic Acid 4CL medium pass
LONjap04G0013220.1 Rosmarinic Acid 4CL medium pass
LONjap05G0002420.1 Rosmarinic Acid 4CL low borderline
LONjap05G0004390.1 Rosmarinic Acid 4CL medium pass
LONjap05G0023550.1 Rosmarinic Acid 4CL low borderline
LONjap06G0013670.1 Rosmarinic Acid 4CL low borderline
LONjap06G0018820.1 Rosmarinic Acid 4CL medium pass
LONjap06G0026920.1 Rosmarinic Acid 4CL medium pass
LONjap06G0027260.1 Rosmarinic Acid 4CL medium pass
LONjap07G0003120.1 Rosmarinic Acid 4CL medium pass
LONjap07G0003140.1 Rosmarinic Acid 4CL medium pass
LONjap07G0003930.1 Rosmarinic Acid 4CL medium pass
LONjap07G0009140.1 Rosmarinic Acid 4CL low borderline
LONjap07G0016850.1 Rosmarinic Acid 4CL low borderline
LONjap07G0023550.1 Rosmarinic Acid 4CL low borderline
LONjap08G0007940.1 Rosmarinic Acid 4CL low borderline
LONjap08G0012560.1 Rosmarinic Acid 4CL low borderline
LONjap09G0010190.1 Rosmarinic Acid 4CL low borderline
LONjap09G0017400.1 Rosmarinic Acid 4CL medium pass
LONjapGWHAAZE000000940011050.1 Rosmarinic Acid 4CL medium pass
LONjap01G0005510.1 Rosmarinic Acid C4H low borderline
LONjap01G0005540.1 Rosmarinic Acid C4H low borderline
LONjap01G0005650.1 Rosmarinic Acid C4H high pass
LONjap01G0005660.1 Rosmarinic Acid C4H medium pass
LONjap01G0005700.1 Rosmarinic Acid C4H low borderline
LONjap01G0005720.1 Rosmarinic Acid C4H low borderline
LONjap01G0005730.1 Rosmarinic Acid C4H low borderline
LONjap01G0005760.1 Rosmarinic Acid C4H low borderline
LONjap01G0005770.1 Rosmarinic Acid C4H low borderline
LONjap01G0005780.1 Rosmarinic Acid C4H low borderline