Lonicera japonica (lonicera_japonica)
Imported from atlas release summary for Lonicera japonica.
2547
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2547
Candidate Genes
UGT
6.91%
C4H
6.65%
7DLGT
5.94%
UFGT
5.69%
C3'H/CYP98A
5.53%
BAHD
4.84%
CYP76
3.68%
IFS
3.51%
Other Families
57.25%
More Families (97)
F3H
162
2.8%
POD
162
2.8%
T3O
138
2.38%
F3'H/CYP75B
126
2.18%
4CL
120
2.07%
NMT
100
1.73%
CODM/T6ODM
96
1.66%
STR
93
1.61%
DWF4/CYP90B1
93
1.61%
CAS
92
1.59%
CAD
90
1.56%
TPS
89
1.54%
BR6OX2/CYP85A2
87
1.5%
H6H
82
1.42%
GES
81
1.4%
G8O/G8H
79
1.37%
BBE
77
1.33%
7DLH
73
1.26%
IO
63
1.09%
SMT1/SMT2/SMT3
63
1.09%
LAC
62
1.07%
CSE
55
0.95%
TRI/TRII
53
0.92%
GS
53
0.92%
SLS
53
0.92%
FNS
48
0.83%
IFR
46
0.79%
F3'5'H/CYP75A
46
0.79%
CYP71
45
0.78%
HCT
44
0.76%
T16H
42
0.73%
CYP90D1
41
0.71%
NCS
35
0.6%
CPD/CYP90A1
35
0.6%
PYKS
33
0.57%
RAS
32
0.55%
BR6OX1/CYP85A1
32
0.55%
COMT
31
0.54%
ANR
30
0.52%
SGD
28
0.48%
F5H/CYP84A
28
0.48%
TAT
28
0.48%
ANS/LDOX
27
0.47%
CCR
27
0.47%
PMT
25
0.43%
COR
19
0.33%
DFR
19
0.33%
8HGO
18
0.31%
DXS
17
0.29%
16OMT
16
0.28%
PAL
15
0.26%
ROT3/CYP90C1
15
0.26%
MVK
15
0.26%
LAMT
13
0.22%
GGPPS
13
0.22%
MPO
12
0.21%
CYP80B1
12
0.21%
CYP51G1
12
0.21%
CYP719
11
0.19%
ISY
10
0.17%
SQE
10
0.17%
FPPS
10
0.17%
CCoAOMT
9
0.16%
CPR
9
0.16%
SQS/FDFT1
9
0.16%
CHS
8
0.14%
HPPR
8
0.14%
CYP80F1
7
0.12%
XMT_MXMT_DXMT
6
0.1%
AACT
6
0.1%
MCT/IspD
6
0.1%
TYDC_DDC
5
0.09%
CNMT
5
0.09%
DET2
5
0.09%
HMGS
5
0.09%
HMGR
5
0.09%
SMO1/SMO2
4
0.07%
MVD
4
0.07%
CHI
3
0.05%
FLS
3
0.05%
IDI
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
TDC
2
0.03%
HDS/IspG
2
0.03%
DXR
2
0.03%
PMK
2
0.03%
ODC
1
0.02%
ADC
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
CMK/IspE
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 878 | 20 | UGT (373) | View species results |
| Alkaloid pathway | 625 | 24 | 7DLGT (175) | View species results |
| Phenylpropanoid pathway | 422 | 13 | POD (148) | View species results |
| Flavonoid pathway | 377 | 15 | UFGT (279) | View species results |
| Steroid pathway | 138 | 13 | CAS (71) | View species results |
| Rosmarinic acid pathway | 107 | 7 | C4H (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2159 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 356 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| LONjap05G0004160.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| LONjap05G0004620.1 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| LONjap05G0009970.1 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| LONjap06G0003070.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| LONjap06G0003100.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| LONjap06G0003190.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| LONjap06G0003200.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| LONjap06G0003230.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| LONjap06G0003240.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| LONjap06G0015080.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| LONjap06G0015090.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| LONjap06G0015710.1 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| LONjap06G0015720.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| LONjap06G0018070.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| LONjap06G0018100.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| LONjap06G0019960.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| LONjap06G0024440.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| LONjap07G0000490.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| LONjap07G0002550.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| LONjap07G0008510.1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| LONjap07G0008820.1 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| LONjap07G0008830.1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| LONjap07G0008890.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| LONjap07G0008910.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| LONjap07G0009730.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| LONjap07G0009740.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| LONjap07G0009790.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| LONjap07G0016810.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| LONjap07G0021440.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| LONjap07G0023270.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| LONjap07G0023280.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| LONjap07G0024220.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| LONjap07G0024230.1 | Alkaloid | NMT | medium | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| LONjap07G0026100.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| LONjap07G0029290.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| LONjap08G0006940.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| LONjap08G0008480.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| LONjap08G0014940.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| LONjap08G0015380.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| LONjap08G0018920.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| LONjap08G0019050.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| LONjap09G0002720.1 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| LONjap09G0012410.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| LONjap09G0018280.1 | Alkaloid | NMT | low | borderline | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| LONjap09G0025180.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| LONjap09G0027250.1 | Alkaloid | NMT | medium | pass | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| LONjap09G0028040.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| LONjap09G0028540.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| LONjapGWHAAZE000000480005640.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| LONjapGWHAAZE000000990011990.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |