Lonicera japonica (lonicera_japonica)
Imported from atlas release summary for Lonicera japonica.
2547
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2547
Candidate Genes
UGT
6.91%
C4H
6.65%
7DLGT
5.94%
UFGT
5.69%
C3'H/CYP98A
5.53%
BAHD
4.84%
CYP76
3.68%
IFS
3.51%
Other Families
57.25%
More Families (97)
F3H
162
2.8%
POD
162
2.8%
T3O
138
2.38%
F3'H/CYP75B
126
2.18%
4CL
120
2.07%
NMT
100
1.73%
CODM/T6ODM
96
1.66%
STR
93
1.61%
DWF4/CYP90B1
93
1.61%
CAS
92
1.59%
CAD
90
1.56%
TPS
89
1.54%
BR6OX2/CYP85A2
87
1.5%
H6H
82
1.42%
GES
81
1.4%
G8O/G8H
79
1.37%
BBE
77
1.33%
7DLH
73
1.26%
IO
63
1.09%
SMT1/SMT2/SMT3
63
1.09%
LAC
62
1.07%
CSE
55
0.95%
TRI/TRII
53
0.92%
GS
53
0.92%
SLS
53
0.92%
FNS
48
0.83%
IFR
46
0.79%
F3'5'H/CYP75A
46
0.79%
CYP71
45
0.78%
HCT
44
0.76%
T16H
42
0.73%
CYP90D1
41
0.71%
NCS
35
0.6%
CPD/CYP90A1
35
0.6%
PYKS
33
0.57%
RAS
32
0.55%
BR6OX1/CYP85A1
32
0.55%
COMT
31
0.54%
ANR
30
0.52%
SGD
28
0.48%
F5H/CYP84A
28
0.48%
TAT
28
0.48%
ANS/LDOX
27
0.47%
CCR
27
0.47%
PMT
25
0.43%
COR
19
0.33%
DFR
19
0.33%
8HGO
18
0.31%
DXS
17
0.29%
16OMT
16
0.28%
PAL
15
0.26%
ROT3/CYP90C1
15
0.26%
MVK
15
0.26%
LAMT
13
0.22%
GGPPS
13
0.22%
MPO
12
0.21%
CYP80B1
12
0.21%
CYP51G1
12
0.21%
CYP719
11
0.19%
ISY
10
0.17%
SQE
10
0.17%
FPPS
10
0.17%
CCoAOMT
9
0.16%
CPR
9
0.16%
SQS/FDFT1
9
0.16%
CHS
8
0.14%
HPPR
8
0.14%
CYP80F1
7
0.12%
XMT_MXMT_DXMT
6
0.1%
AACT
6
0.1%
MCT/IspD
6
0.1%
TYDC_DDC
5
0.09%
CNMT
5
0.09%
DET2
5
0.09%
HMGS
5
0.09%
HMGR
5
0.09%
SMO1/SMO2
4
0.07%
MVD
4
0.07%
CHI
3
0.05%
FLS
3
0.05%
IDI
3
0.05%
6OMT_4OMT_SOMT
2
0.03%
TDC
2
0.03%
HDS/IspG
2
0.03%
DXR
2
0.03%
PMK
2
0.03%
ODC
1
0.02%
ADC
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
CMK/IspE
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 878 | 20 | UGT (373) | View species results |
| Alkaloid pathway | 625 | 24 | 7DLGT (175) | View species results |
| Phenylpropanoid pathway | 422 | 13 | POD (148) | View species results |
| Flavonoid pathway | 377 | 15 | UFGT (279) | View species results |
| Steroid pathway | 138 | 13 | CAS (71) | View species results |
| Rosmarinic acid pathway | 107 | 7 | C4H (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2159 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 356 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| LONjap01G0002550.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap01G0009810.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap01G0009820.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap01G0009980.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap01G0030840.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap02G0001050.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap02G0007440.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap02G0016390.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap02G0022400.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap02G0040680.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap02G0040770.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap02G0041090.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap02G0045550.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap02G0051330.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap02G0051460.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap03G0015530.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap03G0020950.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap03G0023040.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap03G0031450.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0002880.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0002900.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0006590.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap04G0026040.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0026070.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0026080.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0026090.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0026100.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0026110.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0026120.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0026130.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap04G0027130.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap05G0009970.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap05G0011410.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap05G0014760.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap05G0014770.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap05G0015850.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap05G0028950.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap05G0029430.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap06G0020240.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap06G0020530.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap06G0027680.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap07G0014610.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap07G0014770.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap07G0020780.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap09G0004510.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap09G0008130.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| LONjap09G0008140.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap09G0008170.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap09G0008230.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| LONjap09G0008240.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |