PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA09G0054000.1 Alkaloid NMT medium pass
ORGLA09G0073300.1 Alkaloid NMT low borderline
ORGLA09G0154700.1 Alkaloid NMT low borderline
ORGLA10G0160100.1 Alkaloid NMT medium pass
ORGLA11G0016300.1 Alkaloid NMT medium pass
ORGLA11G0160500.1 Alkaloid NMT medium pass
ORGLA12G0014000.1 Alkaloid NMT medium pass
ORGLA12G0052300.1 Alkaloid NMT medium borderline
ORGLA12G0159200.1 Alkaloid NMT low borderline
ORGLA04G0012500.1 Alkaloid ODC medium pass
ORGLA01G0003100.1 Alkaloid PMT low borderline
ORGLA01G0047500.1 Alkaloid PMT medium pass
ORGLA01G0051800.1 Alkaloid PMT medium pass
ORGLA01G0102900.1 Alkaloid PMT medium pass
ORGLA01G0121100.1 Alkaloid PMT medium pass
ORGLA01G0182300.1 Alkaloid PMT medium pass
ORGLA02G0090800.1 Alkaloid PMT medium pass
ORGLA02G0098800.1 Alkaloid PMT medium borderline
ORGLA03G0279800.1 Alkaloid PMT low borderline
ORGLA04G0018500.1 Alkaloid PMT medium pass
ORGLA04G0019400.1 Alkaloid PMT medium pass
ORGLA04G0027600.1 Alkaloid PMT medium pass
ORGLA05G0047800.1 Alkaloid PMT medium pass
ORGLA05G0085400.1 Alkaloid PMT medium pass
ORGLA05G0096300.1 Alkaloid PMT medium pass
ORGLA06G0050400.1 Alkaloid PMT low borderline
ORGLA06G0050600.1 Alkaloid PMT low borderline
ORGLA06G0050800.1 Alkaloid PMT low borderline
ORGLA06G0141800.1 Alkaloid PMT medium borderline
ORGLA06G0164700.1 Alkaloid PMT medium pass
ORGLA06G0165000.1 Alkaloid PMT medium pass
ORGLA06G0227600.1 Alkaloid PMT medium pass
ORGLA07G0096000.1 Alkaloid PMT medium borderline
ORGLA08G0052600.1 Alkaloid PMT medium pass
ORGLA09G0078800.1 Alkaloid PMT medium pass
ORGLA10G0002700.1 Alkaloid PMT medium pass
ORGLA10G0002800.1 Alkaloid PMT medium pass
ORGLA10G0003600.1 Alkaloid PMT medium pass
ORGLA10G0004100.1 Alkaloid PMT medium pass
ORGLA10G0004300.1 Alkaloid PMT medium pass
ORGLA10G0008500.1 Alkaloid PMT medium pass
ORGLA10G0008600.1 Alkaloid PMT medium pass
ORGLA11G0047300.1 Alkaloid PMT low borderline
ORGLA11G0048500.1 Alkaloid PMT low borderline
ORGLA01G0149700.1 Alkaloid PYKS low borderline
ORGLA01G0173900.1 Alkaloid PYKS high pass
ORGLA02G0075700.1 Alkaloid PYKS low borderline
ORGLA02G0268400.1 Alkaloid PYKS low borderline
ORGLA02G0322100.1 Alkaloid PYKS low borderline
ORGLA03G0057600.1 Alkaloid PYKS low borderline