PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA11G0215800.1 Alkaloid TRI/TRII medium pass
ORGLA12G0068200.1 Alkaloid TRI/TRII medium pass
ORGLA12G0073500.1 Alkaloid TRI/TRII medium pass
ORGLA01G0264400.1 Alkaloid TYDC_DDC medium borderline
ORGLA05G0195300.1 Alkaloid TYDC_DDC medium borderline
ORGLA07G0104400.1 Alkaloid TYDC_DDC medium borderline
ORGLA08G0019700.1 Alkaloid TYDC_DDC medium borderline
ORGLA08G0201600.1 Alkaloid TYDC_DDC medium borderline
ORGLA10G0069500.1 Alkaloid TYDC_DDC medium borderline
ORGLA10G0078100.1 Alkaloid TYDC_DDC medium borderline
ORGLA10G0162400.1 Alkaloid TYDC_DDC medium borderline
ORGLA06G0085800.1 Alkaloid XMT_MXMT_DXMT medium borderline
ORGLA06G0086400.1 Alkaloid XMT_MXMT_DXMT medium borderline
ORGLA06G0114500.1 Alkaloid XMT_MXMT_DXMT medium borderline
ORGLA06G0114800.1 Alkaloid XMT_MXMT_DXMT medium borderline
ORGLA06G0115000.1 Alkaloid XMT_MXMT_DXMT medium borderline
ORGLA06G0241200.1 Alkaloid XMT_MXMT_DXMT medium borderline
ORGLA06G0301100.1 Alkaloid XMT_MXMT_DXMT medium borderline
ORGLA11G0077000.1 Alkaloid XMT_MXMT_DXMT medium borderline
ORGLA11G0077700.1 Alkaloid XMT_MXMT_DXMT low borderline
ORGLA01G0118400.1 Flavonoid 4CL medium pass
ORGLA01G0204600.1 Flavonoid 4CL low borderline
ORGLA01G0218100.1 Flavonoid 4CL low borderline
ORGLA01G0258100.1 Flavonoid 4CL low borderline
ORGLA01G0346800.1 Flavonoid 4CL medium pass
ORGLA01G0346900.1 Flavonoid 4CL medium pass
ORGLA02G0013100.1 Flavonoid 4CL medium pass
ORGLA02G0054100.1 Flavonoid 4CL medium pass
ORGLA02G0161100.1 Flavonoid 4CL low borderline
ORGLA02G0329700.1 Flavonoid 4CL low borderline
ORGLA03G0021700.1 Flavonoid 4CL medium pass
ORGLA03G0023400.1 Flavonoid 4CL medium pass
ORGLA03G0024800.1 Flavonoid 4CL medium pass
ORGLA03G0024900.1 Flavonoid 4CL medium pass
ORGLA03G0038200.1 Flavonoid 4CL medium pass
ORGLA03G0139700.1 Flavonoid 4CL medium pass
ORGLA03G0139800.1 Flavonoid 4CL medium pass
ORGLA03G0376200.1 Flavonoid 4CL low borderline
ORGLA03G0405200.1 Flavonoid 4CL medium pass
ORGLA04G0054100.1 Flavonoid 4CL medium pass
ORGLA04G0084500.1 Flavonoid 4CL low borderline
ORGLA04G0257100.1 Flavonoid 4CL medium pass
ORGLA04G0264200.1 Flavonoid 4CL medium pass
ORGLA05G0021700.1 Flavonoid 4CL low borderline
ORGLA05G0097100.1 Flavonoid 4CL low borderline
ORGLA06G0035700.1 Flavonoid 4CL low borderline
ORGLA06G0195400.1 Flavonoid 4CL medium pass
ORGLA07G0086100.1 Flavonoid 4CL medium pass
ORGLA07G0183900.1 Flavonoid 4CL medium pass
ORGLA08G0021200.1 Flavonoid 4CL medium pass