PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA06G0046000.1 Flavonoid ANS/LDOX medium borderline
ORGLA10G0044100.1 Flavonoid ANS/LDOX low borderline
ORGLA01G0291500.1 Flavonoid C4H medium pass
ORGLA02G0140700.1 Flavonoid C4H low borderline
ORGLA02G0140800.1 Flavonoid C4H low borderline
ORGLA04G0018200.1 Flavonoid C4H low borderline
ORGLA04G0273100.1 Flavonoid C4H low borderline
ORGLA05G0099000.1 Flavonoid C4H medium borderline
ORGLA06G0147900.1 Flavonoid C4H low borderline
ORGLA06G0157300.1 Flavonoid C4H medium borderline
ORGLA07G0189200.1 Flavonoid C4H medium borderline
ORGLA08G0104600.1 Flavonoid C4H low borderline
ORGLA08G0175200.1 Flavonoid C4H low borderline
ORGLA03G0357600.1 Flavonoid CHI low borderline
ORGLA11G0201200.1 Flavonoid CHI medium pass
ORGLA12G0006500.1 Flavonoid CHI medium pass
ORGLA01G0173900.1 Flavonoid CHS medium pass
ORGLA04G0001800.1 Flavonoid CHS medium pass
ORGLA05G0062100.1 Flavonoid CHS medium pass
ORGLA05G0062200.1 Flavonoid CHS medium pass
ORGLA05G0062300.1 Flavonoid CHS medium pass
ORGLA05G0062500.1 Flavonoid CHS medium pass
ORGLA05G0187000.1 Flavonoid CHS medium pass
ORGLA07G0061400.1 Flavonoid CHS medium pass
ORGLA07G0083000.1 Flavonoid CHS medium pass
ORGLA07G0097400.1 Flavonoid CHS medium pass
ORGLA07G0125000.1 Flavonoid CHS medium pass
ORGLA07G0125100.1 Flavonoid CHS medium pass
ORGLA07G0138400.1 Flavonoid CHS medium pass
ORGLA07G0138800.1 Flavonoid CHS medium pass
ORGLA07G0219500.1 Flavonoid CHS medium pass
ORGLA07G0226500.1 Flavonoid CHS medium pass
ORGLA07G0236800.1 Flavonoid CHS medium pass
ORGLA10G0024100.1 Flavonoid CHS medium pass
ORGLA10G0025900.1 Flavonoid CHS medium pass
ORGLA10G0028900.1 Flavonoid CHS medium pass
ORGLA10G0029100.1 Flavonoid CHS medium pass
ORGLA10G0029300.1 Flavonoid CHS medium pass
ORGLA11G0131900.1 Flavonoid CHS medium pass
ORGLA11G0132100.1 Flavonoid CHS medium pass
ORGLA11G0132300.1 Flavonoid CHS medium pass
ORGLA11G0132400.1 Flavonoid CHS medium pass
ORGLA11G0132700.1 Flavonoid CHS medium pass
ORGLA11G0217900.1 Flavonoid CHS medium pass
ORGLA12G0042900.1 Flavonoid CHS medium pass
ORGLA01G0099700.1 Flavonoid DFR low borderline
ORGLA01G0193000.1 Flavonoid DFR medium borderline
ORGLA02G0056800.1 Flavonoid DFR medium borderline
ORGLA02G0319100.1 Flavonoid DFR medium pass
ORGLA02G0320900.1 Flavonoid DFR medium pass