PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA02G0074100.1 Flavonoid UFGT medium pass
ORGLA02G0075900.1 Flavonoid UFGT high pass
ORGLA02G0076000.1 Flavonoid UFGT high pass
ORGLA02G0076100.1 Flavonoid UFGT high pass
ORGLA02G0076200.1 Flavonoid UFGT high pass
ORGLA02G0076300.1 Flavonoid UFGT medium pass
ORGLA02G0076400.1 Flavonoid UFGT medium pass
ORGLA02G0078200.1 Flavonoid UFGT low borderline
ORGLA02G0092100.1 Flavonoid UFGT high pass
ORGLA02G0092200.1 Flavonoid UFGT high pass
ORGLA02G0092300.1 Flavonoid UFGT medium pass
ORGLA02G0092700.1 Flavonoid UFGT medium pass
ORGLA02G0140900.1 Flavonoid UFGT low borderline
ORGLA02G0149600.1 Flavonoid UFGT medium pass
ORGLA02G0285700.1 Flavonoid UFGT medium pass
ORGLA02G0285800.1 Flavonoid UFGT medium pass
ORGLA02G0285900.1 Flavonoid UFGT medium pass
ORGLA02G0315700.1 Flavonoid UFGT high pass
ORGLA03G0078600.1 Flavonoid UFGT medium pass
ORGLA03G0170700.1 Flavonoid UFGT medium pass
ORGLA03G0265400.1 Flavonoid UFGT high pass
ORGLA03G0278600.1 Flavonoid UFGT medium pass
ORGLA03G0284400.1 Flavonoid UFGT medium pass
ORGLA03G0284500.1 Flavonoid UFGT high pass
ORGLA03G0308700.1 Flavonoid UFGT high pass
ORGLA03G0317700.1 Flavonoid UFGT medium pass
ORGLA03G0318000.1 Flavonoid UFGT medium pass
ORGLA03G0318100.1 Flavonoid UFGT medium pass
ORGLA03G0346500.1 Flavonoid UFGT high pass
ORGLA03G0349300.1 Flavonoid UFGT high pass
ORGLA03G0361800.1 Flavonoid UFGT medium pass
ORGLA03G0372700.1 Flavonoid UFGT medium pass
ORGLA04G0028900.1 Flavonoid UFGT medium pass
ORGLA04G0030300.1 Flavonoid UFGT low borderline
ORGLA04G0030400.1 Flavonoid UFGT high pass
ORGLA04G0030500.1 Flavonoid UFGT high pass
ORGLA04G0030600.1 Flavonoid UFGT medium pass
ORGLA04G0042600.1 Flavonoid UFGT high pass
ORGLA04G0042900.1 Flavonoid UFGT medium pass
ORGLA04G0043000.1 Flavonoid UFGT medium pass
ORGLA04G0043200.1 Flavonoid UFGT medium pass
ORGLA04G0043500.1 Flavonoid UFGT high pass
ORGLA04G0043700.1 Flavonoid UFGT medium pass
ORGLA04G0053300.1 Flavonoid UFGT medium pass
ORGLA04G0056500.1 Flavonoid UFGT medium pass
ORGLA04G0056600.1 Flavonoid UFGT medium pass
ORGLA04G0057100.1 Flavonoid UFGT high pass
ORGLA04G0057300.1 Flavonoid UFGT medium pass
ORGLA04G0057800.1 Flavonoid UFGT medium pass
ORGLA04G0113800.1 Flavonoid UFGT medium pass