PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1854
Candidate Protein Records
1650
Pathway-Level Records
3976
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ORGLA07G0090700.1 Terpenoid CYP71 medium borderline
ORGLA08G0188000.1 Terpenoid CYP71 medium pass
ORGLA08G0189700.1 Terpenoid CYP71 medium pass
ORGLA09G0027800.1 Terpenoid CYP71 medium borderline
ORGLA09G0135500.1 Terpenoid CYP71 medium borderline
ORGLA09G0140600.1 Terpenoid CYP71 medium pass
ORGLA09G0166300.1 Terpenoid CYP71 medium pass
ORGLA10G0022800.1 Terpenoid CYP71 medium pass
ORGLA10G0031300.1 Terpenoid CYP71 medium borderline
ORGLA10G0099900.1 Terpenoid CYP71 medium borderline
ORGLA10G0100000.1 Terpenoid CYP71 medium borderline
ORGLA10G0100100.1 Terpenoid CYP71 medium borderline
ORGLA11G0111900.1 Terpenoid CYP71 medium borderline
ORGLA11G0169700.1 Terpenoid CYP71 medium borderline
ORGLA11G0222700.1 Terpenoid CYP71 medium borderline
ORGLA11G0223000.1 Terpenoid CYP71 medium borderline
ORGLA12G0119600.1 Terpenoid CYP71 medium borderline
ORGLA12G0175900.1 Terpenoid CYP71 medium pass
ORGLA01G0050300.1 Terpenoid CYP76 low borderline
ORGLA01G0072200.1 Terpenoid CYP76 medium borderline
ORGLA01G0121200.1 Terpenoid CYP76 low borderline
ORGLA01G0161800.1 Terpenoid CYP76 medium pass
ORGLA01G0229400.1 Terpenoid CYP76 medium pass
ORGLA01G0291500.1 Terpenoid CYP76 low borderline
ORGLA02G0006500.1 Terpenoid CYP76 medium pass
ORGLA02G0007400.1 Terpenoid CYP76 low borderline
ORGLA02G0082000.1 Terpenoid CYP76 low borderline
ORGLA02G0126400.1 Terpenoid CYP76 low borderline
ORGLA02G0182500.1 Terpenoid CYP76 medium borderline
ORGLA02G0182700.1 Terpenoid CYP76 medium borderline
ORGLA02G0182800.1 Terpenoid CYP76 medium borderline
ORGLA02G0183900.1 Terpenoid CYP76 medium borderline
ORGLA02G0197400.1 Terpenoid CYP76 low borderline
ORGLA02G0198300.1 Terpenoid CYP76 low borderline
ORGLA03G0007900.1 Terpenoid CYP76 medium borderline
ORGLA03G0025200.1 Terpenoid CYP76 medium pass
ORGLA03G0101400.1 Terpenoid CYP76 medium borderline
ORGLA03G0101500.1 Terpenoid CYP76 medium borderline
ORGLA03G0102600.1 Terpenoid CYP76 medium pass
ORGLA03G0174900.1 Terpenoid CYP76 medium borderline
ORGLA03G0220200.1 Terpenoid CYP76 medium pass
ORGLA03G0235900.1 Terpenoid CYP76 medium pass
ORGLA03G0319900.1 Terpenoid CYP76 medium pass
ORGLA03G0389200.1 Terpenoid CYP76 medium borderline
ORGLA04G0000500.1 Terpenoid CYP76 medium borderline
ORGLA04G0010700.1 Terpenoid CYP76 medium pass
ORGLA04G0018800.1 Terpenoid CYP76 low borderline
ORGLA04G0040600.1 Terpenoid CYP76 medium pass
ORGLA04G0086300.1 Terpenoid CYP76 low borderline
ORGLA04G0132700.1 Terpenoid CYP76 medium borderline