PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
PHvul04G0003890.1 Alkaloid 7DLGT medium pass
PHvul04G0003910.1 Alkaloid 7DLGT medium pass
PHvul04G0003920.1 Alkaloid 7DLGT medium pass
PHvul04G0003930.1 Alkaloid 7DLGT high pass
PHvul04G0003940.1 Alkaloid 7DLGT high pass
PHvul04G0003950.1 Alkaloid 7DLGT medium pass
PHvul04G0003960.1 Alkaloid 7DLGT medium pass
PHvul04G0003970.1 Alkaloid 7DLGT medium pass
PHvul04G0004070.1 Alkaloid 7DLGT medium pass
PHvul04G0004080.1 Alkaloid 7DLGT medium pass
PHvul04G0004460.1 Alkaloid 7DLGT high pass
PHvul04G0004640.1 Alkaloid 7DLGT high pass
PHvul04G0004650.1 Alkaloid 7DLGT medium pass
PHvul04G0004660.1 Alkaloid 7DLGT medium pass
PHvul04G0004670.1 Alkaloid 7DLGT medium pass
PHvul04G0004680.1 Alkaloid 7DLGT medium pass
PHvul04G0004690.1 Alkaloid 7DLGT high pass
PHvul04G0004700.1 Alkaloid 7DLGT medium pass
PHvul04G0004710.1 Alkaloid 7DLGT medium pass
PHvul04G0009920.1 Alkaloid 7DLGT medium pass
PHvul04G0010420.1 Alkaloid 7DLGT medium pass
PHvul04G0010430.1 Alkaloid 7DLGT low borderline
PHvul04G0010430.2 Alkaloid 7DLGT medium pass
PHvul04G0010450.1 Alkaloid 7DLGT high pass
PHvul04G0014040.1 Alkaloid 7DLGT low borderline
PHvul04G0014040.2 Alkaloid 7DLGT low borderline
PHvul04G0014060.1 Alkaloid 7DLGT low borderline
PHvul04G0014070.1 Alkaloid 7DLGT low borderline
PHvul04G0014090.1 Alkaloid 7DLGT low borderline
PHvul04G0014100.1 Alkaloid 7DLGT low borderline
PHvul05G0000500.1 Alkaloid 7DLGT medium pass
PHvul05G0000510.1 Alkaloid 7DLGT low borderline
PHvul05G0000510.2 Alkaloid 7DLGT medium pass
PHvul05G0000520.1 Alkaloid 7DLGT medium pass
PHvul05G0000520.2 Alkaloid 7DLGT low borderline
PHvul05G0009310.1 Alkaloid 7DLGT low borderline
PHvul05G0009330.1 Alkaloid 7DLGT low borderline
PHvul05G0009340.1 Alkaloid 7DLGT low borderline
PHvul06G0000930.1 Alkaloid 7DLGT medium pass
PHvul06G0000940.1 Alkaloid 7DLGT medium pass
PHvul06G0001510.1 Alkaloid 7DLGT high pass
PHvul06G0004530.1 Alkaloid 7DLGT low borderline
PHvul06G0011040.1 Alkaloid 7DLGT low borderline
PHvul06G0020240.1 Alkaloid 7DLGT low borderline
PHvul06G0020690.1 Alkaloid 7DLGT medium pass
PHvul06G0020700.1 Alkaloid 7DLGT medium pass
PHvul06G0020710.1 Alkaloid 7DLGT medium pass
PHvul06G0020990.1 Alkaloid 7DLGT low borderline
PHvul06G0021000.1 Alkaloid 7DLGT low borderline
PHvul06G0021010.1 Alkaloid 7DLGT low borderline