Phaseolus vulgaris (phaseolus_vulgaris)
Imported from atlas release summary for Phaseolus vulgaris.
2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2008
Candidate Genes
BAHD
6.11%
C3'H/CYP98A
5.71%
C4H
5.36%
UFGT
4.25%
UGT
4.23%
7DLGT
4.15%
POD
4.04%
CYP76
3.4%
Other Families
62.75%
More Families (97)
4CL
153
3.27%
F3H
145
3.1%
T3O
143
3.06%
IFS
143
3.06%
NMT
105
2.24%
DWF4/CYP90B1
98
2.09%
F3'H/CYP75B
96
2.05%
STR
92
1.97%
CAD
89
1.9%
CODM/T6ODM
83
1.77%
CAS
80
1.71%
SMT1/SMT2/SMT3
71
1.52%
SGD
69
1.47%
H6H
65
1.39%
CYP71
65
1.39%
BR6OX2/CYP85A2
64
1.37%
TRI/TRII
62
1.33%
GES
49
1.05%
LAC
49
1.05%
TPS
48
1.03%
IFR
47
1.0%
CSE
46
0.98%
BBE
45
0.96%
COMT
44
0.94%
RAS
43
0.92%
ANR
42
0.9%
CYP90D1
40
0.85%
PYKS
37
0.79%
HCT
37
0.79%
IO
36
0.77%
16OMT
33
0.71%
7DLH
33
0.71%
T16H
32
0.68%
GS
31
0.66%
F3'5'H/CYP75A
31
0.66%
PMT
30
0.64%
FNS
29
0.62%
CCR
28
0.6%
G8O/G8H
25
0.53%
CYP51G1
23
0.49%
NCS
22
0.47%
SLS
20
0.43%
CNMT
19
0.41%
COR
19
0.41%
LAMT
18
0.38%
CYP80B1
18
0.38%
PAL
18
0.38%
BR6OX1/CYP85A1
18
0.38%
MPO
17
0.36%
CHS
17
0.36%
CCoAOMT
17
0.36%
TAT
17
0.36%
CPD/CYP90A1
17
0.36%
8HGO
16
0.34%
F5H/CYP84A
15
0.32%
ROT3/CYP90C1
15
0.32%
DFR
14
0.3%
SQS/FDFT1
13
0.28%
CHI
9
0.19%
SQE
9
0.19%
GGPPS
9
0.19%
ANS/LDOX
8
0.17%
HPPR
8
0.17%
DET2
8
0.17%
AACT
8
0.17%
SMO1/SMO2
7
0.15%
TDC
6
0.13%
ISY
6
0.13%
CPR
6
0.13%
HMGR
6
0.13%
DXS
6
0.13%
CYP719
5
0.11%
HMGS
5
0.11%
MVD
4
0.09%
ODC
3
0.06%
MVK
3
0.06%
FPPS
3
0.06%
TYDC_DDC
2
0.04%
FLS
2
0.04%
CPI1
2
0.04%
DWF1
2
0.04%
MCT/IspD
2
0.04%
DXR
2
0.04%
CYP80F1
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
ADC
1
0.02%
XMT_MXMT_DXMT
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
PMK
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 572 | 20 | BAHD (235) | View species results |
| Alkaloid pathway | 473 | 20 | 7DLGT (83) | View species results |
| Phenylpropanoid pathway | 419 | 11 | POD (185) | View species results |
| Flavonoid pathway | 279 | 10 | UFGT (189) | View species results |
| Rosmarinic acid pathway | 138 | 7 | C4H (60) | View species results |
| Steroid pathway | 127 | 11 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1615 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 366 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| PHvul03G0016380.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| PHvul04G0006780.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul04G0007940.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul04G0012740.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul05G0006350.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul05G0006490.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul06G0008030.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul06G0008040.1 | Alkaloid | SLS | medium | pass | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul06G0008040.2 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul07G0007200.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul07G0007210.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul07G0021230.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul08G0000570.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul09G0004120.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| PHvul09G0020440.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| PHvul10G0007420.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul10G0007430.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul11G0000020.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| PHvul11G0015940.1 | Alkaloid | SLS | medium | pass | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| PHvul11G0016400.1 | Alkaloid | SLS | medium | pass | SLS__00001__sp_Q05047_SLS1_CATRO |