PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
PHvul06G0007820.1 Flavonoid C4H medium borderline
PHvul06G0008050.1 Flavonoid C4H low borderline
PHvul08G0024850.1 Flavonoid C4H medium borderline
PHvul01G0000880.1 Rosmarinic Acid C4H medium pass
PHvul01G0002240.1 Rosmarinic Acid C4H low borderline
PHvul01G0003740.1 Rosmarinic Acid C4H low borderline
PHvul01G0003740.2 Rosmarinic Acid C4H low borderline
PHvul01G0005260.1 Rosmarinic Acid C4H low borderline
PHvul01G0011140.1 Rosmarinic Acid C4H medium pass
PHvul01G0011200.1 Rosmarinic Acid C4H low borderline
PHvul01G0013640.1 Rosmarinic Acid C4H medium pass
PHvul01G0013650.1 Rosmarinic Acid C4H low borderline
PHvul01G0013660.1 Rosmarinic Acid C4H low borderline
PHvul01G0013670.1 Rosmarinic Acid C4H low borderline
PHvul01G0013680.1 Rosmarinic Acid C4H low borderline
PHvul01G0013700.1 Rosmarinic Acid C4H low borderline
PHvul01G0013710.1 Rosmarinic Acid C4H medium pass
PHvul01G0013720.1 Rosmarinic Acid C4H medium pass
PHvul01G0018330.1 Rosmarinic Acid C4H medium pass
PHvul01G0024020.1 Rosmarinic Acid C4H low borderline
PHvul01G0025960.1 Rosmarinic Acid C4H low borderline
PHvul02G0000560.1 Rosmarinic Acid C4H low borderline
PHvul02G0001450.1 Rosmarinic Acid C4H low borderline
PHvul02G0001460.1 Rosmarinic Acid C4H low borderline
PHvul02G0002270.1 Rosmarinic Acid C4H low borderline
PHvul02G0002480.1 Rosmarinic Acid C4H low borderline
PHvul02G0002490.1 Rosmarinic Acid C4H low borderline
PHvul02G0002500.1 Rosmarinic Acid C4H medium pass
PHvul02G0002510.1 Rosmarinic Acid C4H low borderline
PHvul02G0002950.1 Rosmarinic Acid C4H low borderline
PHvul02G0002950.2 Rosmarinic Acid C4H low borderline
PHvul02G0009450.1 Rosmarinic Acid C4H low borderline
PHvul02G0009980.1 Rosmarinic Acid C4H low borderline
PHvul02G0009990.1 Rosmarinic Acid C4H low borderline
PHvul02G0011190.1 Rosmarinic Acid C4H medium pass
PHvul02G0012230.1 Rosmarinic Acid C4H low borderline
PHvul02G0012520.1 Rosmarinic Acid C4H low borderline
PHvul02G0012610.1 Rosmarinic Acid C4H medium pass
PHvul02G0012620.1 Rosmarinic Acid C4H low borderline
PHvul02G0012620.2 Rosmarinic Acid C4H medium pass
PHvul02G0012620.3 Rosmarinic Acid C4H low borderline
PHvul02G0016560.1 Rosmarinic Acid C4H low borderline
PHvul02G0016760.1 Rosmarinic Acid C4H low borderline
PHvul02G0018550.1 Rosmarinic Acid C4H low borderline
PHvul02G0018560.1 Rosmarinic Acid C4H medium pass
PHvul02G0022430.1 Rosmarinic Acid C4H medium pass
PHvul02G0024870.1 Rosmarinic Acid C4H low borderline
PHvul02G0026130.1 Rosmarinic Acid C4H medium pass
PHvul02G0026140.1 Rosmarinic Acid C4H low borderline
PHvul02G0026150.1 Rosmarinic Acid C4H medium pass