PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.49% Alkaloid pathway 23.56% Phenylpropanoid pathway 20.87% Flavonoid pathway 13.89% Rosmarinic acid pathway 6.87% Steroid pathway 6.32%
Family Distribution
BAHD 6.11% C3'H/CYP98A 5.71% C4H 5.36% UFGT 4.25% UGT 4.23% 7DLGT 4.15% POD 4.04% CYP76 3.4%
Other Families 62.75%
More Families (97)
4CL 153 3.27% F3H 145 3.1% T3O 143 3.06% IFS 143 3.06% NMT 105 2.24% DWF4/CYP90B1 98 2.09% F3'H/CYP75B 96 2.05% STR 92 1.97% CAD 89 1.9% CODM/T6ODM 83 1.77% CAS 80 1.71% SMT1/SMT2/SMT3 71 1.52% SGD 69 1.47% H6H 65 1.39% CYP71 65 1.39% BR6OX2/CYP85A2 64 1.37% TRI/TRII 62 1.33% GES 49 1.05% LAC 49 1.05% TPS 48 1.03% IFR 47 1.0% CSE 46 0.98% BBE 45 0.96% COMT 44 0.94% RAS 43 0.92% ANR 42 0.9% CYP90D1 40 0.85% PYKS 37 0.79% HCT 37 0.79% IO 36 0.77% 16OMT 33 0.71% 7DLH 33 0.71% T16H 32 0.68% GS 31 0.66% F3'5'H/CYP75A 31 0.66% PMT 30 0.64% FNS 29 0.62% CCR 28 0.6% G8O/G8H 25 0.53% CYP51G1 23 0.49% NCS 22 0.47% SLS 20 0.43% CNMT 19 0.41% COR 19 0.41% LAMT 18 0.38% CYP80B1 18 0.38% PAL 18 0.38% BR6OX1/CYP85A1 18 0.38% MPO 17 0.36% CHS 17 0.36% CCoAOMT 17 0.36% TAT 17 0.36% CPD/CYP90A1 17 0.36% 8HGO 16 0.34% F5H/CYP84A 15 0.32% ROT3/CYP90C1 15 0.32% DFR 14 0.3% SQS/FDFT1 13 0.28% CHI 9 0.19% SQE 9 0.19% GGPPS 9 0.19% ANS/LDOX 8 0.17% HPPR 8 0.17% DET2 8 0.17% AACT 8 0.17% SMO1/SMO2 7 0.15% TDC 6 0.13% ISY 6 0.13% CPR 6 0.13% HMGR 6 0.13% DXS 6 0.13% CYP719 5 0.11% HMGS 5 0.11% MVD 4 0.09% ODC 3 0.06% MVK 3 0.06% FPPS 3 0.06% TYDC_DDC 2 0.04% FLS 2 0.04% CPI1 2 0.04% DWF1 2 0.04% MCT/IspD 2 0.04% DXR 2 0.04% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02% ADC 1 0.02% XMT_MXMT_DXMT 1 0.02% DWF7 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF5 1 0.02% MDS/IspF 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% PMK 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQE
Reset
Gene Pathway Family Confidence Status Best Target
PHvul01G0003180.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
PHvul02G0021480.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
PHvul06G0002450.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
PHvul06G0002450.2 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
PHvul06G0002450.3 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
PHvul06G0002450.4 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
PHvul06G0019930.1 Steroid SQE medium pass SQE__00002__sp_O48651_SQE1_PANGI
PHvul09G0010520.1 Steroid SQE low borderline SQE__00001__sp_B7TWW5_SQE2_PANGI
PHvulscaffold_12190000540.1 Steroid SQE low borderline SQE__00005__sp_Q9SM02_ERG14_ARATH