PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
PHvul04G0007160.1 Rosmarinic Acid C4H low borderline
PHvul04G0007170.1 Rosmarinic Acid C4H medium pass
PHvul04G0008530.1 Rosmarinic Acid C4H low borderline
PHvul04G0009310.1 Rosmarinic Acid C4H low borderline
PHvul04G0012110.1 Rosmarinic Acid C4H medium pass
PHvul04G0012120.1 Rosmarinic Acid C4H medium pass
PHvul04G0012130.1 Rosmarinic Acid C4H medium pass
PHvul04G0012140.1 Rosmarinic Acid C4H low borderline
PHvul04G0012150.1 Rosmarinic Acid C4H low borderline
PHvul04G0012170.1 Rosmarinic Acid C4H medium pass
PHvul04G0012180.1 Rosmarinic Acid C4H medium pass
PHvul04G0012190.1 Rosmarinic Acid C4H medium pass
PHvul04G0012740.1 Rosmarinic Acid C4H low borderline
PHvul04G0013880.1 Rosmarinic Acid C4H low borderline
PHvul04G0013880.2 Rosmarinic Acid C4H low borderline
PHvul04G0016350.1 Rosmarinic Acid C4H medium pass
PHvul04G0016350.2 Rosmarinic Acid C4H medium pass
PHvul04G0016370.1 Rosmarinic Acid C4H medium pass
PHvul04G0016380.1 Rosmarinic Acid C4H medium pass
PHvul04G0016390.1 Rosmarinic Acid C4H medium pass
PHvul04G0016400.1 Rosmarinic Acid C4H medium pass
PHvul04G0016410.1 Rosmarinic Acid C4H medium pass
PHvul05G0000230.1 Rosmarinic Acid C4H low borderline
PHvul05G0001530.1 Rosmarinic Acid C4H low borderline
PHvul05G0001530.2 Rosmarinic Acid C4H low borderline
PHvul05G0005290.1 Rosmarinic Acid C4H low borderline
PHvul05G0006290.1 Rosmarinic Acid C4H low borderline
PHvul05G0006300.1 Rosmarinic Acid C4H low borderline
PHvul05G0006300.2 Rosmarinic Acid C4H low borderline
PHvul05G0006320.1 Rosmarinic Acid C4H low borderline
PHvul05G0006350.1 Rosmarinic Acid C4H low borderline
PHvul05G0006490.1 Rosmarinic Acid C4H low borderline
PHvul05G0017350.1 Rosmarinic Acid C4H low borderline
PHvul06G0000250.1 Rosmarinic Acid C4H low borderline
PHvul06G0000800.1 Rosmarinic Acid C4H low borderline
PHvul06G0001340.1 Rosmarinic Acid C4H medium pass
PHvul06G0002240.1 Rosmarinic Acid C4H low borderline
PHvul06G0003330.1 Rosmarinic Acid C4H medium pass
PHvul06G0004940.1 Rosmarinic Acid C4H medium pass
PHvul06G0004950.1 Rosmarinic Acid C4H medium pass
PHvul06G0004960.1 Rosmarinic Acid C4H low borderline
PHvul06G0005000.1 Rosmarinic Acid C4H low borderline
PHvul06G0005020.1 Rosmarinic Acid C4H low borderline
PHvul06G0005030.1 Rosmarinic Acid C4H low borderline
PHvul06G0005050.1 Rosmarinic Acid C4H low borderline
PHvul06G0005060.1 Rosmarinic Acid C4H low borderline
PHvul06G0005070.1 Rosmarinic Acid C4H low borderline
PHvul06G0005080.1 Rosmarinic Acid C4H low borderline
PHvul06G0005080.2 Rosmarinic Acid C4H low borderline
PHvul06G0005080.3 Rosmarinic Acid C4H low borderline