PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2008
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
PHvul01G0005260.1 Alkaloid T3O medium borderline
PHvul01G0009030.1 Alkaloid T3O low borderline
PHvul01G0011140.1 Alkaloid T3O medium borderline
PHvul01G0011200.1 Alkaloid T3O low borderline
PHvul01G0013640.1 Alkaloid T3O medium borderline
PHvul01G0013650.1 Alkaloid T3O medium borderline
PHvul01G0013660.1 Alkaloid T3O medium borderline
PHvul01G0013670.1 Alkaloid T3O low borderline
PHvul01G0013700.1 Alkaloid T3O medium borderline
PHvul01G0013710.1 Alkaloid T3O medium borderline
PHvul01G0013720.1 Alkaloid T3O medium borderline
PHvul01G0015550.1 Alkaloid T3O medium pass
PHvul01G0015570.1 Alkaloid T3O medium pass
PHvul01G0018640.1 Alkaloid T3O medium pass
PHvul01G0024020.1 Alkaloid T3O medium pass
PHvul02G0000560.1 Alkaloid T3O medium pass
PHvul02G0001450.1 Alkaloid T3O medium borderline
PHvul02G0001460.1 Alkaloid T3O medium borderline
PHvul02G0002480.1 Alkaloid T3O medium borderline
PHvul02G0002490.1 Alkaloid T3O medium borderline
PHvul02G0002500.1 Alkaloid T3O medium borderline
PHvul02G0002510.1 Alkaloid T3O medium borderline
PHvul02G0002950.1 Alkaloid T3O medium pass
PHvul02G0002950.2 Alkaloid T3O medium pass
PHvul02G0009980.1 Alkaloid T3O high pass
PHvul02G0009990.1 Alkaloid T3O high pass
PHvul02G0011190.1 Alkaloid T3O medium borderline
PHvul02G0012230.1 Alkaloid T3O medium pass
PHvul02G0015480.2 Alkaloid T3O medium pass
PHvul02G0016760.1 Alkaloid T3O medium pass
PHvul02G0018560.1 Alkaloid T3O medium borderline
PHvul02G0022430.1 Alkaloid T3O medium borderline
PHvul02G0024450.1 Alkaloid T3O medium pass
PHvul02G0024870.1 Alkaloid T3O medium pass
PHvul02G0026130.1 Alkaloid T3O medium borderline
PHvul02G0026150.1 Alkaloid T3O medium borderline
PHvul02G0031470.1 Alkaloid T3O medium borderline
PHvul03G0000150.1 Alkaloid T3O medium pass
PHvul03G0001000.1 Alkaloid T3O medium borderline
PHvul03G0001010.1 Alkaloid T3O medium borderline
PHvul03G0001020.1 Alkaloid T3O medium borderline
PHvul03G0001030.1 Alkaloid T3O medium borderline
PHvul03G0004090.1 Alkaloid T3O medium pass
PHvul03G0004200.1 Alkaloid T3O medium borderline
PHvul03G0005290.1 Alkaloid T3O medium borderline
PHvul03G0005300.1 Alkaloid T3O medium borderline
PHvul03G0005310.1 Alkaloid T3O medium borderline
PHvul03G0007470.1 Alkaloid T3O medium borderline
PHvul03G0008620.1 Alkaloid T3O medium borderline
PHvul03G0009040.1 Alkaloid T3O medium borderline